RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MAST4O15021 2626 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 FREM1Q5H8C1 2179 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 KPNA4O00629 521 aaPredicted RBP19.19■□□□□ 0.66
CLN3-207ENST00000395653 CASKO14936 926 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 CTAG2O75638 210 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 MT-ND1P03886 318 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 NQO1P15559 274 aaKnown RBP19.19■□□□□ 0.66
CLN3-207ENST00000395653 ZNF43P17038 809 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 COX5AP20674 150 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 AAED1Q7RTV5 226 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 KDM8Q8N371 416 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 TMEM255BQ8WV15 326 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 TMEM239Q8WW34 195 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 KISS1RQ969F8 398 aaPredicted RBP19.19■□□□□ 0.66
CLN3-207ENST00000395653 USB1Q9BQ65 265 aaKnown RBP19.19■□□□□ 0.66
CLN3-207ENST00000395653 ACTR6Q9GZN1 396 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 MEPEQ9NQ76 525 aaPredicted RBP19.19■□□□□ 0.66
CLN3-207ENST00000395653 ZNF226Q9NYT6 803 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 TAS2R1Q9NYW7 299 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 PRPF19Q9UMS4 504 aaKnown RBP19.19■□□□□ 0.66
CLN3-207ENST00000395653 CACNA1DQ01668 2161 aa19.19■□□□□ 0.66
CLN3-207ENST00000395653 UBOX5O94941 541 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 IGHV3-9P01782 118 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 YAP1P46937 504 aaKnown RBP19.18■□□□□ 0.66
CLN3-207ENST00000395653 UGT2B15P54855 530 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 PMS2P3Q13401 168 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 ANKRD34AQ69YU3 496 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 UBE2J2Q8N2K1 259 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 OR5J2Q8NH18 312 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 FNDC11Q9BVV2 318 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 NANSQ9NR45 359 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 ASB6Q9NWX5 421 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 ZNF229Q9UJW7 825 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 RCE1Q9Y256 329 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 ENPP4Q9Y6X5 453 aa19.18■□□□□ 0.66
CLN3-207ENST00000395653 ENO4A6NNW6 628 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 MS4A18H0YCH9 400 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 J3KTA2 159 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 FFAR1O14842 300 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 PRSS23O95084 383 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 CH25HO95992 272 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 IGHV1-2P23083 117 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 IL32P24001 234 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 C1DQ13901 141 aaKnown RBP19.17■□□□□ 0.66
CLN3-207ENST00000395653 MS4A18Q3C1V0 323 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 TSPO2Q5TGU0 170 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 TMEM200AQ86VY9 491 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 CYP4Z1Q86W10 505 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 FAM86B1Q8N7N1 296 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 SLCO5A1Q9H2Y9 848 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 MUC13Q9H3R2 512 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 RASSF1Q9NS23 344 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 ACTR3BQ9P1U1 418 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 MED31Q9Y3C7 131 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 OR6C65A6NJZ3 312 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 PLPP3O14495 311 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 TACC2O95359 2948 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 HPRP00739 348 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 CRYGSP22914 178 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 PUDPQ08623 228 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 TRAM2Q15035 370 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 C22orf34Q6ZV56 151 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 BHLHA15Q7RTS1 189 aaPredicted RBP19.17■□□□□ 0.66
CLN3-207ENST00000395653 SLC46A3Q7Z3Q1 461 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 TSEN54Q7Z6J9 526 aaKnown RBP19.17■□□□□ 0.66
CLN3-207ENST00000395653 POMGNT2Q8NAT1 580 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 S100PBPQ96BU1 408 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 PYURFQ96I23 114 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 C7orf34Q96L11 122 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 SLC7A10Q9NS82 523 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 MAN2C1Q9NTJ4 1040 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 TAS2R16Q9NYV7 291 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 RHCGQ9UBD6 479 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 UPB1Q9UBR1 384 aa19.17■□□□□ 0.66
CLN3-207ENST00000395653 NAV2Q8IVL1 2488 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 HTR3EA5X5Y0 456 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 PDLIM1O00151 329 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 TRAF3IP2O43734 574 aaPredicted RBP19.16■□□□□ 0.66
CLN3-207ENST00000395653 AKAP8O43823 692 aaKnown RBP19.16■□□□□ 0.66
CLN3-207ENST00000395653 LYZL6O75951 148 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 ASAH2BP0C7U1 165 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 SELENOPP49908 381 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 CLDN17P56750 224 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 IL1RL1Q01638 556 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 FAPQ12884 760 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 TSC22D1Q15714 1073 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 NIPAL3Q6P499 406 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 PXKQ7Z7A4 578 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 UEVLDQ8IX04 471 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 ZNF433Q8N7K0 673 aaPredicted RBP19.16■□□□□ 0.66
CLN3-207ENST00000395653 PFN4Q8NHR9 129 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 LURAP1Q96LR2 239 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 ANKRD19PQ9H560 264 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 NDUFAF4Q9P032 175 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 NOX1Q9Y5S8 564 aa19.16■□□□□ 0.66
CLN3-207ENST00000395653 ZNF432O94892 652 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 OR6A2O95222 327 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 SEMG1P04279 462 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 THBDP07204 575 aa19.15■□□□□ 0.66
CLN3-207ENST00000395653 ADORA3P0DMS8 318 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms