RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PLPP5Q8NEB5 264 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 OR2T27Q8NH04 317 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 NRIP3Q9NQ35 241 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 PTTG3PQ9NZH4 202 aa11.9□□□□□ -0.5
CCDC88C-204ENST00000389857 TXNL1O43396 289 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 FBXO24O75426 580 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 DPP4P27487 766 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 RAC1P63000 192 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 SORDQ00796 357 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 TBCEQ15813 527 aaPredicted RBP11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 TEX19Q8NA77 164 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC30A7Q8NEW0 376 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 KCNG3Q8TAE7 436 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 SECTM1Q8WVN6 248 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 ETV7Q9Y603 341 aa11.9□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC7A9P82251 487 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 HOXC5Q00444 222 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 MS4A2Q01362 244 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 HYAL4Q2M3T9 481 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 LYPD4Q6UWN0 246 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 TFAP2CQ92754 450 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 KHSRPQ92945 711 aaKnown RBP eCLIP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 MACROD1Q9BQ69 325 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 GINS3Q9BRX5 216 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 FAM234AQ9H0X4 552 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 AIFM1O95831 613 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 F13BP05160 661 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 CCR7P32248 378 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 ERV3-1Q14264 604 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 RPE65Q16518 533 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 YIF1BQ5BJH7 314 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 COQ3Q9NZJ6 369 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 RCE1Q9Y256 329 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 MRPS28Q9Y2Q9 187 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 PUS1Q9Y606 427 aaKnown RBP eCLIP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 COL2A1P02458 1487 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 IGKV6-21A0A0C4DH24 114 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 TMEM221A6NGB7 291 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 CACNG3O60359 315 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 EIF1BO60739 113 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 PRAMEF4O60810 478 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 NXPH2O95156 264 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 FOLR1P15328 257 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 GMPRP36959 345 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 GALEQ14376 348 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 BEX5Q5H9J7 111 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 TMEM178AQ8NBL3 297 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 OR13C2Q8NGS9 318 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 H1FXQ92522 213 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 FCRL1Q96LA6 429 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 COPS3Q9UNS2 423 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 FAM183AA6NL82 134 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 SPINT2O43291 252 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 SMAD6O43541 496 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 TRAF3IP2O43734 574 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 GM2AP17900 193 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 RNF170Q96K19 258 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF597Q96LX8 424 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 SIGLEC1Q9BZZ2 1709 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 SELENOIQ9C0D9 397 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 TRAV36DV7A0A075B6V5 113 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 DVL1O14640 695 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 AQP9O43315 295 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF728P0DKX0 622 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 DVL1P1P54792 670 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 TATDN3Q17R31 274 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC35G3Q8N808 338 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 SAT2Q96F10 170 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 KATNB1Q9BVA0 655 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 NECAP2Q9NVZ3 263 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 OR5H15A6NDH6 313 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 OR5H14A6NHG9 310 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 OR5H1A6NKK0 313 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 NCR1O76036 304 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 CTBSQ01459 385 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 EMX1Q04741 257 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 MBOAT2Q6ZWT7 520 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 FAM213BQ8TBF2 198 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 HSD17B8Q92506 261 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 OR6C1Q96RD1 312 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 NUDT9Q9BW91 350 aa11.89□□□□□ -0.51
CCDC88C-204ENST00000389857 RGPD8O14715 1765 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 RRP8O43159 456 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 NFYBP25208 207 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 EIF1P41567 113 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ACSM1Q08AH1 577 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SNTB1Q13884 538 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF266Q14584 549 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SIAH1Q8IUQ4 282 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZFP90Q8TF47 636 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ASB11Q8WXH4 323 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ABHD6Q9BV23 337 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TAS2R16Q9NYV7 291 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 CLDN24A6NM45 220 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF814B7Z6K7 855 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SOCS6O14544 535 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SIGLEC6O43699 453 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 OR10J4P0C629 311 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TBPP20226 339 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 MAGEB1P43366 347 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms