RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ZNF117Q03924 483 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TDGQ13569 410 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 SF3A2Q15428 464 aaKnown RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ELOA3BQ3SY89 546 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ZFP69Q49AA0 526 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 C14orf28Q4W4Y0 310 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 WDR45BQ5MNZ6 344 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 WBP2NLQ6ICG8 309 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 MTFR2Q6P444 385 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 POMGNT2Q8NAT1 580 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ELOA3Q8NG57 546 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TAAR8Q969N4 342 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 MARVELD1Q9BSK0 173 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ZCCHC4Q9H5U6 513 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 FRYLO94915 3013 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 TRBV2A0A0J9YWF9 115 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 OR2B3O76000 313 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 POU3F3P20264 500 aaPredicted RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 BCKDHBP21953 392 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 UQCRC1P31930 480 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 GALNSP34059 522 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 NUDT1P36639 197 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 ADH7P40394 386 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 NXPH1P58417 271 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 RPL6Q02878 288 aaKnown RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 CCDC85BQ15834 202 aaPredicted RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 RNASE12Q5GAN4 147 aaKnown RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF57Q68EA5 555 aaPredicted RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 TPRA1Q86W33 373 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 SYS1Q8N2H4 156 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 SLC43A2Q8N370 569 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 ADAMTS18Q8TE60 1221 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 SNX33Q8WV41 574 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 DERL3Q96Q80 235 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 PHF7Q9BWX1 381 aaPredicted RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 PRODH2Q9UF12 536 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 HIF3AQ9Y2N7 669 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 ALPK2Q86TB3 2170 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 UCHL1P09936 223 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 PITPNBP48739 271 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 GRM7Q14831 915 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 UBXN2BQ14CS0 331 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 TCTE1Q5JU00 501 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 PLET1Q6UQ28 207 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 MARCH3Q86UD3 253 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 LSM14AQ8ND56 463 aaKnown RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 OR7G1Q8NGA0 311 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 RPS4Y2Q8TD47 263 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 HAVCR2Q8TDQ0 301 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 ALG12Q9BV10 488 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 HDHD2Q9H0R4 259 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 MOV10Q9HCE1 1003 aaKnown RBP12.17□□□□□ -0.46
CCDC3-202ENST00000378839 GALNT9Q9HCQ5 603 aa12.17□□□□□ -0.46
CCDC3-202ENST00000378839 SPAG17Q6Q759 2223 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 FAM240BA0A1B0GVZ2 78 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ACOD1A6NK06 481 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SMLR1H3BR10 107 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF264O43296 627 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 PPM1BO75688 479 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TRAPPC2P0DI81 140 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TRAPPC2BP0DI82 140 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 PRKAR1AP10644 381 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 PRKCAP17252 672 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 EDNRAP25101 427 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 HLA-DMAP28067 261 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TACR3P29371 465 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SKP1P63208 163 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 RPL18Q07020 188 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SERTAD2Q14140 314 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TRAM1Q15629 374 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 PLA1AQ53H76 456 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 MESTQ5EB52 335 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 UNQ9370/PRO34162Q6UXP9 181 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 IZUMO1Q8IYV9 350 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 MS4A15Q8N5U1 240 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 KCTD12Q96CX2 325 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TSPAN32Q96QS1 320 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 GAL3ST4Q96RP7 486 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 FKRPQ9H9S5 495 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 NOX4Q9NPH5 578 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SEC16AO15027 2179 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 IGHV1OR21-1A0A087WYE8 117 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TRAV1-2A0A0B4J238 106 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ANKRD61A6NGH8 418 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 CPNE3O75131 537 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ZFPL1O95159 310 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 GIMD1P0DJR0 217 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 RBMS1P29558 406 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SLC6A1P30531 599 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 CTXN1P60606 82 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 DGCR2P98153 550 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 C1orf189Q5VU69 101 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 PRSS45Q7RTY3 260 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SLC25A45Q8N413 288 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 C10orf53Q8N6V4 93 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 PCNPQ8WW12 178 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 LIPHQ8WWY8 451 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 OMA1Q96E52 524 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms