RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZMAT5Q9UDW3 170 aaKnown RBP13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SSR3Q9UNL2 185 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 SSUH2Q9Y2M2 353 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ALG5Q9Y673 324 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CDH10Q9Y6N8 788 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 ATMQ13315 3056 aa13.04□□□□□ -0.32
HMGA1-203ENST00000374116 CLDN4O14493 209 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 SOCS6O14544 535 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 SURF4O15260 269 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 FMO6PO60774 539 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 CBX7O95931 251 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 HMGN1P05114 100 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 CELA2AP08217 269 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 MAP2K3P46734 347 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 WNT4P56705 351 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 STX4Q12846 297 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 PAQR6Q6TCH4 344 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF620Q6ZNG0 422 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 ANKRD37Q7Z713 158 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 LAX1Q8IWV1 398 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 RNF113BQ8IZP6 322 aaKnown RBP13.03□□□□□ -0.32
HMGA1-203ENST00000374116 GHDCQ8N2G8 530 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 UBASH3BQ8TF42 649 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 CCDC120Q96HB5 630 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 BEX2Q9BXY8 128 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 RBFOX1Q9NWB1 397 aaKnown RBP13.03□□□□□ -0.32
HMGA1-203ENST00000374116 MRPS33Q9Y291 106 aaKnown RBP13.03□□□□□ -0.32
HMGA1-203ENST00000374116 HSPB11Q9Y547 144 aa13.03□□□□□ -0.32
HMGA1-203ENST00000374116 CENPVL1A0A0U1RR11 272 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 BLACEA4D250 179 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 CDHR4A6H8M9 788 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 TMEM8BA6NDV4 472 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 NTN1O95631 604 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 GUSBP08236 651 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 PTBP1P26599 531 aaKnown RBP eCLIP13.02□□□□□ -0.32
HMGA1-203ENST00000374116 RPS19P39019 145 aaKnown RBP13.02□□□□□ -0.32
HMGA1-203ENST00000374116 GPR4P46093 362 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 RUNX1T1Q06455 604 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 MAPK14Q16539 360 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 DEFB109BQ30KR1 87 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 PGGHGQ32M88 737 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 CLEC12AQ5QGZ9 265 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 LCN1P1Q5VSP4 162 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 HSDL2Q6YN16 418 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 QSOX2Q6ZRP7 698 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 ZNF595Q8IYB9 648 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 OR11G2Q8NGC1 345 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 OR4Q3Q8NH05 313 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 METTL21AQ8WXB1 218 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 PPA2Q9H2U2 334 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 P4HTMQ9NXG6 502 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 KCNE5Q9UJ90 142 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 GPR52Q9Y2T5 361 aa13.02□□□□□ -0.32
HMGA1-203ENST00000374116 IGKV3D-11A0A0A0MRZ8 115 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF891A8MT65 544 aaPredicted RBP13.02□□□□□ -0.33
HMGA1-203ENST00000374116 PIP5K1CO60331 668 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 CTNSO60931 367 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 NKX2-2O95096 273 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 IFNA16P05015 189 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 GABRA3P34903 492 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 CDH11P55287 796 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 HSD17B7P56937 341 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 SNTA1Q13424 505 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 EXOSC7Q15024 291 aaKnown RBP13.02□□□□□ -0.33
HMGA1-203ENST00000374116 OR1Q1Q15612 314 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 TAB1Q15750 504 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 CLLU1Q5K131 121 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 MRPL2Q5T653 305 aaKnown RBP13.02□□□□□ -0.33
HMGA1-203ENST00000374116 AADACL4Q5VUY2 407 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 LIPKQ5VXJ0 399 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 SLC30A6Q6NXT4 461 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 GPAT4Q86UL3 456 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 ADGRG3Q86Y34 549 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 OR2T33Q8NG76 320 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 BRIX1Q8TDN6 353 aaKnown RBP13.02□□□□□ -0.33
HMGA1-203ENST00000374116 PRSS27Q9BQR3 290 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 MARVELD1Q9BSK0 173 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 LMF2Q9BU23 707 aaKnown RBP13.02□□□□□ -0.33
HMGA1-203ENST00000374116 FBXO34Q9NWN3 711 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 FBXL4Q9UKA2 621 aa13.02□□□□□ -0.33
HMGA1-203ENST00000374116 USP24Q9UPU5 2620 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 TUBAL3A6NHL2 446 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 UNC119BA6NIH7 251 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 ARGFXA6NJG6 315 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 K7ENP7 123 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 RGS5O15539 181 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 IL1AP01583 271 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 TPOP07202 933 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 CD63P08962 238 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 TSPAN19P0C672 248 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 IFI30P13284 250 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 PRKACAP17612 351 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 AZGP1P25311 298 aaKnown RBP13.01□□□□□ -0.33
HMGA1-203ENST00000374116 TPBGQ13641 420 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.01□□□□□ -0.333e-6■□□□□ 10.5
HMGA1-203ENST00000374116 COL28A1Q2UY09 1125 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 MZT2BQ6NZ67 158 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 INO80CQ6PI98 192 aaPredicted RBP13.01□□□□□ -0.33
HMGA1-203ENST00000374116 TMEM205Q6UW68 189 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 TEX261Q6UWH6 196 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms