RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 PRKAR1AP10644 381 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 ATF4P18848 351 aaPredicted RBP12.69□□□□□ -0.38
TRIM4-201ENST00000349062 RPS4Y1P22090 263 aaKnown RBP12.69□□□□□ -0.38
TRIM4-201ENST00000349062 ETV6P41212 452 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 SLC37A1P57057 533 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 EFNB1P98172 346 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 BIKQ13323 160 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 KANSL1Q7Z3B3 1105 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 GID4Q8IVV7 300 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 OR5M1Q8NGP8 315 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 NR4A3Q92570 626 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 MSANTD3Q96H12 275 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 MIXL1Q9H2W2 232 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 FGF20Q9NP95 211 aaPredicted RBP12.69□□□□□ -0.38
TRIM4-201ENST00000349062 SLC23A1Q9UHI7 598 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 TEX51A0A1B0GUA7 166 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 TMEM129A0AVI4 362 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 CIB4A0PJX0 185 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 OR6C68A6NDL8 312 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 H3BML4 177 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 ZNF264O43296 627 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 EDNRAP25101 427 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 POU4F3Q15319 338 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 LYSMD4Q5XG99 296 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 FAM205BPQ63HN1 556 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 MZT2BQ6NZ67 158 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 DEFB123Q8N688 67 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 GHSRQ92847 366 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 ZFP3Q96NJ6 502 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 BRD7Q9NPI1 651 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 TRIM36Q9NQ86 728 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 LANCL2Q9NS86 450 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 ZNF224Q9NZL3 707 aa12.69□□□□□ -0.38
TRIM4-201ENST00000349062 ALOX12BO75342 701 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 TOXO94900 526 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 GABRA5P31644 462 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 EVI2BP34910 448 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SLC29A4Q7RTT9 530 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SAMD12Q8N8I0 201 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 STT3BQ8TCJ2 826 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 BRIX1Q8TDN6 353 aaKnown RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SLC25A46Q96AG3 418 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 LCORQ96JN0 433 aaPredicted RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 LMF2Q9BU23 707 aaKnown RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 C14orf105Q9NVL8 296 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 PLEKHB1Q9UF11 243 aaPredicted RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 AK6Q9Y3D8 172 aaKnown RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 RP1L1Q8IWN7 2480 aaPredicted RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SLC22A31A6NKX4 558 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 INMT-MINDY4F8WBC2 141 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 RNF13O43567 381 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 MT-ND5P03915 603 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SSTR2P30874 369 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 CLDN12P56749 244 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SQSTM1Q13501 440 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 SERTAD2Q14140 314 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 XKRXQ6PP77 449 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 TMPRSS11FQ6ZWK6 438 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 RNF113BQ8IZP6 322 aaKnown RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 ZNF527Q8NB42 609 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 LSM14AQ8ND56 463 aaKnown RBP12.68□□□□□ -0.38
TRIM4-201ENST00000349062 THEM6Q8WUY1 208 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 RNF170Q96K19 258 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 PRDM9Q9NQV7 894 aa12.68□□□□□ -0.38
TRIM4-201ENST00000349062 ACOD1A6NK06 481 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 SIGLEC6O43699 453 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 TFPIP10646 304 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GLB1P16278 677 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GZMKP49863 264 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 TMEM72A0PK05 275 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 IRGMA1A4Y4 181 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 PCP4L1A6NKN8 68 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 TFP02787 698 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 HEXBP07686 556 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 OR8G3PP0DMU2 310 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GABRA4P48169 554 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GPR143P51810 404 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 FBXW4P57775 412 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 CCL7P80098 99 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 FUT7Q11130 342 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.67□□□□□ -0.381e-18■■■■□ 22.5
TRIM4-201ENST00000349062 ALG10Q5BKT4 473 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 SLC35D2Q76EJ3 337 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 C9orf40Q8IXQ3 194 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 RDH10Q8IZV5 341 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 ARHGEF39Q8N4T4 335 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 OR6N2Q8NGY6 317 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GON7Q9BXV9 100 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GAREM1Q9H706 876 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 GPR27Q9NS67 375 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 NKIRAS2Q9NYR9 191 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 TRBV2A0A0J9YWF9 115 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 G3V3Y1 287 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 FABP7O15540 132 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 LYRM1O43325 122 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 SYPP08247 313 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 MAP3K8P41279 467 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 ZNF117Q03924 483 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 TPBGQ13641 420 aa12.67□□□□□ -0.38
TRIM4-201ENST00000349062 ZSWIM7Q19AV6 140 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms