RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 A0A087WUJ7 227 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 SHISA9B4DS77 424 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 VAMP5O95183 116 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 CBLP22681 906 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 CDH12P55289 794 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 NCALDP61601 193 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 LTBQ06643 244 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 SPOCK1Q08629 439 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 PGGHGQ32M88 737 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 ZNF672Q499Z4 452 aaPredicted RBP12.66□□□□□ -0.38
HMGN3-202ENST00000344726 FAM69AQ5T7M9 428 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 LINGO2Q7L985 606 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 SNX32Q86XE0 403 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 CALHM3Q86XJ0 350 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 OR6T1Q8NGN1 323 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 TMEM171Q8WVE6 324 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 SLC47A1Q96FL8 570 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 ZNF317Q96PQ6 595 aaPredicted RBP12.66□□□□□ -0.38
HMGN3-202ENST00000344726 KLHL14Q9P2G3 628 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 RASD1Q9Y272 281 aa12.66□□□□□ -0.38
HMGN3-202ENST00000344726 MAGED1Q9Y5V3 778 aaPredicted RBP12.66□□□□□ -0.38
HMGN3-202ENST00000344726 ARFGEF3Q5TH69 2177 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 TRAV36DV7A0A075B6V5 113 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 LOC100653049A0A140TA62 436 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 M0R082 166 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 OVOL3O00110 214 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 MRASO14807 208 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 KRT34O76011 436 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 LYPD3O95274 346 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 THY1P04216 161 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 C8BP07358 591 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 MPGP29372 298 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 GRPRP30550 384 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 MDH1P40925 334 aaKnown RBP12.65□□□□□ -0.38
HMGN3-202ENST00000344726 ZNF83P51522 516 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 CYLC2Q14093 348 aaPredicted RBP12.65□□□□□ -0.38
HMGN3-202ENST00000344726 VMACQ2NL98 169 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 HSP90B2PQ58FF3 399 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 COQ5Q5HYK3 327 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 OR7E24Q6IFN5 339 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 WDR88Q6ZMY6 472 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 ZNF417Q8TAU3 575 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 FBXW5Q969U6 566 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 ZNF587Q96SQ5 575 aaPredicted RBP12.65□□□□□ -0.38
HMGN3-202ENST00000344726 MCHR1Q99705 422 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 C1QTNF6Q9BXI9 259 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 TMEM27Q9HBJ8 222 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 MED4Q9NPJ6 270 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 SLC17A5Q9NRA2 495 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 ARMCX1Q9P291 453 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 SLC13A4Q9UKG4 626 aa12.65□□□□□ -0.38
HMGN3-202ENST00000344726 DNHD1Q96M86 4753 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 BBIP1A8MTZ0 92 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 LRRN3E7EW58 273 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 ABCD4O14678 606 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 AIM2O14862 343 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 SMAD7O15105 426 aaKnown RBP12.64□□□□□ -0.39
HMGN3-202ENST00000344726 OR2T1O43869 369 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 FMO6PO60774 539 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 UPK3AO75631 287 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 ZNF432O94892 652 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 LY6G6DO95868 133 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 HPRP00739 348 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 BGLAPP02818 100 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 CDKN1AP38936 164 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 KRTAP21-3Q3LHN1 58 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 MMEL1Q495T6 779 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 ENTPD8Q5MY95 495 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 NIPAL3Q6P499 406 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 C5orf46Q6UWT4 87 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 CLEC9AQ6UXN8 241 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 LINC00114Q6XXX2 140 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 CCDC80Q76M96 950 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 PATL1Q86TB9 770 aaKnown RBP12.64□□□□□ -0.39
HMGN3-202ENST00000344726 RANBP3LQ86VV4 465 aaPredicted RBP12.64□□□□□ -0.39
HMGN3-202ENST00000344726 SLC30A8Q8IWU4 369 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 POMGNT2Q8NAT1 580 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 C1orf162Q8NEQ5 155 aaPredicted RBP12.64□□□□□ -0.39
HMGN3-202ENST00000344726 OR8J3Q8NGG0 315 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 VANGL1Q8TAA9 524 aaPredicted RBP12.64□□□□□ -0.39
HMGN3-202ENST00000344726 RNF217Q8TC41 542 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 SLC41A3Q96GZ6 507 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 ZNF583Q96ND8 569 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 MOGAT1Q96PD6 335 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 ALKBH3Q96Q83 286 aaPredicted RBP12.64□□□□□ -0.39
HMGN3-202ENST00000344726 EVA1AQ9H8M9 152 aa12.64□□□□□ -0.39
HMGN3-202ENST00000344726 CPSF4LA6NMK7 179 aaKnown RBP12.63□□□□□ -0.39
HMGN3-202ENST00000344726 MS4A18H0YCH9 400 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 TRAF3IP2O43734 574 aaPredicted RBP12.63□□□□□ -0.39
HMGN3-202ENST00000344726 CD8AP01732 235 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 HEXAP06865 529 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 HLA-DOBP13765 273 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 ZNF43P17038 809 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 CDH2P19022 906 aaPredicted RBP12.63□□□□□ -0.39
HMGN3-202ENST00000344726 CD40P25942 277 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 GTF2E2P29084 291 aaKnown RBP12.63□□□□□ -0.39
HMGN3-202ENST00000344726 CLDN17P56750 224 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 RPS4XP62701 263 aaKnown RBP12.63□□□□□ -0.39
HMGN3-202ENST00000344726 MAPRE2Q15555 327 aa12.63□□□□□ -0.39
HMGN3-202ENST00000344726 MS4A18Q3C1V0 323 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms