RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 MFSD4AQ8N468 514 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC25A51Q9H1U9 297 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PDLIM7Q9NR12 457 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZDBF2Q9HCK1 2354 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 B4GALT2O60909 372 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 IGFBP5P24593 272 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC6A3Q01959 620 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM86AQ8N2M4 240 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C2CD4AQ8NCU7 369 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 NANOS1Q8WY41 292 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ADAM2Q99965 735 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TOLLIPQ9H0E2 274 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM242Q9NWH2 141 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PAK4O96013 591 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 MAS1P04201 325 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CXCR2P25025 360 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HTR2CP28335 458 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 UCP3P55916 312 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HNRNPA0Q13151 305 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PRR18Q8N4B5 295 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CYB561A3Q8NBI2 242 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 MR1Q95460 341 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZPBPQ9BS86 351 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 METTL15A6NJ78 407 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 H3BML4 177 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TCF21O43680 179 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 THBS1P07996 1170 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CSNK1DP48730 415 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 POLR2LP62875 67 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ACER2Q5QJU3 275 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 KCMF1Q9P0J7 381 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ADAM18Q9Y3Q7 739 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ANTXRLA6NF34 631 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CDK2AP1O14519 115 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PHOX2AO14813 284 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PI3P19957 117 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 DHPSP49366 369 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RAB40BQ12829 278 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF611Q8N823 705 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SUSD6Q92537 303 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 LENG9Q96B70 501 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CYP8B1Q9UNU6 501 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 DHRS7Q9Y394 339 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 V9GYS6 101 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 LRCH4O75427 683 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 AHSGP02765 367 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RAP1BP61224 184 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 UPP1Q16831 310 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GGTA1PQ4G0N0 100 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FBXW12Q6X9E4 464 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 VASH2Q86V25 355 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 THEM5Q8N1Q8 247 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RBPMSQ93062 196 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC25A46Q96AG3 418 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GPR137Q96N19 417 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ACO2Q99798 780 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FSCN3Q9NQT6 498 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TLR4O00206 839 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ADGRF1Q5T601 910 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM71Q6P5X7 295 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CHST13Q8NET6 341 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 POPDC2Q9HBU9 364 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 RAB36O95755 333 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 OR7A5Q15622 319 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 STK35Q8TDR2 534 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SCARB1Q8WTV0 552 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 S100A16Q96FQ6 103 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ZIC5Q96T25 663 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 HCN2Q9UL51 889 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 MEIS2O14770 477 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ST8SIA5O15466 376 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ACSM4P0C7M7 580 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 NFYAP23511 347 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PTH2RP49190 550 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 COX19Q49B96 90 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM201Q5SNT2 666 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 NT5C3BQ969T7 300 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 EAF1Q96JC9 268 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 OR4K3Q96R72 315 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C1QTNF7Q9BXJ2 289 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FZD3Q9NPG1 666 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 B4DGG1 531 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PIAS2O75928 621 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 VNN1O95497 513 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FGF3P11487 239 aaPredicted RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 GNG10P50151 68 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 CSRP3P50461 194 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 PRRX1P54821 245 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SLC27A4Q6P1M0 643 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 OR6K3Q8NGY3 331 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 C5orf34Q96MH7 638 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 P2RY13Q9BPV8 354 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FAM234AQ9H0X4 552 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 TUBD1Q9UJT1 453 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 STRAPQ9Y3F4 350 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ANGPTL7O43827 346 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 ABHD16AO95870 558 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 COX7A2P14406 83 aa3.29□□□□□ -1.88
SYNE1-201ENST00000341594 FBLP22087 321 aaKnown RBP3.29□□□□□ -1.88
SYNE1-201ENST00000341594 SERTAD2Q14140 314 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms