RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 C5orf49A4QMS7 147 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SGCEO43556 437 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 PRAMEF4O60810 478 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SULT1C4O75897 302 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 IFNA4P05014 189 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 BPGMP07738 259 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 CPEP16870 476 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 PVALBP20472 110 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 EDNRAP25101 427 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 F2RP25116 425 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 TRHRP34981 398 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 PSMD7P51665 324 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SUMO3P55854 103 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 FADDQ13158 208 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 ODF4Q2M2E3 257 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 PRAMEF9Q5VWM5 478 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 RBPMS2Q6ZRY4 209 aaKnown RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 CSNK2A3Q8NEV1 391 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 TMEM138Q9NPI0 162 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 MED16Q9Y2X0 877 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 NRXN3Q9Y4C0 1643 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF816-ZNF321PA0A0X1KG74 233 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 UBE2QL1A1L167 161 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 B9A039 149 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 CLPXO76031 633 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 FBP1P09467 338 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 LSM11P83369 360 aaKnown RBP eCLIP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 C18orf63Q68DL7 685 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 TM4SF19Q96DZ7 209 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 LINC00615Q96LM1 132 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 DMRT3Q9NQL9 472 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 NUFIP1Q9UHK0 495 aaKnown RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 XIRP1Q702N8 1843 aaKnown RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 TRGV10A0A0A0MS01 117 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 C21orf33P30042 268 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 CORO7P57737 925 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 EIF4EBP2Q13542 120 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF460Q14592 562 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 PROX2Q3B8N5 592 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 GLT8D1Q68CQ7 371 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 CLEC6AQ6EIG7 209 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 OR6K3Q8NGY3 331 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 LIPHQ8WWY8 451 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 LGALS12Q96DT0 336 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 KTI12Q96EK9 354 aaPredicted RBP7.67□□□□□ -1.18
HMGB1-203ENST00000341423 GPR137Q96N19 417 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 TMEM59Q9BXS4 323 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 ATG2BQ96BY7 2078 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 ZSCAN5BA6NJL1 495 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 SCELO95171 688 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 CST1P01037 141 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 PRKACBP22694 351 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TMBIM6P55061 237 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 BNIP2Q12982 314 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 LTB4RQ15722 352 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 NUFIP2Q7Z417 695 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 C17orf53Q8N3J3 647 aaPredicted RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 OR52N2Q8NGI0 321 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 OR5W2Q8NH69 310 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 RNF170Q96K19 258 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TTTY12Q9BZ98 90 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TPK1Q9H3S4 243 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TAS2R1Q9NYW7 299 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 C3orf80F5H4A9 247 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 XPNPEP2O43895 674 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 LIMS1P48059 325 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 GIPRP48546 466 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 MAP2K6P52564 334 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 KCNJ10P78508 379 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 NOXA1Q86UR1 476 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 OR52E2Q8NGJ4 325 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 PIWIL2Q8TC59 973 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 IL1F10Q8WWZ1 152 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ACSS3Q9H6R3 686 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF701Q9NV72 531 aaPredicted RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 FASNP49327 2511 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 CHP2O43745 196 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 CRYZL1O95825 349 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 AIFM1O95831 613 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 IMPDH1P20839 514 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 LCN1P31025 176 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 OR3A4PP47883 348 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ADARP55265 1226 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 DEFA1P59665 94 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 DEFA3P59666 94 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 CD69Q07108 199 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 FGL1Q08830 312 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF704Q6ZNC4 412 aaPredicted RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF551Q7Z340 670 aaPredicted RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 GALNT4Q8N4A0 578 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TSSK6Q9BXA6 273 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 HRASLSQ9HDD0 168 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 FBXL17Q9UF56 701 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 SSR3Q9UNL2 185 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TRAV36DV7A0A075B6V5 113 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 NKX2-6A6NCS4 301 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 FUT1P19526 365 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 EVI2BP34910 448 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 RPS5P46782 204 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 LGALS7P47929 136 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms