RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 LINGO2Q7L985 606 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 PATL1Q86TB9 770 aaKnown RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 TSPYL5Q86VY4 417 aaPredicted RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 SLC30A8Q8IWU4 369 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 WDR31Q8NA23 367 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 C1QTNF6Q9BXI9 259 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 GSX2Q9BZM3 304 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 GSX1Q9H4S2 264 aaPredicted RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 SLC17A5Q9NRA2 495 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 MRGBPQ9NV56 204 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 SELENONQ9NZV5 590 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 CAPN7Q9Y6W3 813 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 ZFHX3Q15911 3703 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 ALPK2Q86TB3 2170 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 BBIP1A8MTZ0 92 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 AIM2O14862 343 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 ARHGEF9O43307 516 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 OR2T1O43869 369 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 UPK3AO75631 287 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 BGLAPP02818 100 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 SOD3P08294 240 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 CDH11P55287 796 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 CLDN17P56750 224 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 LTBQ06643 244 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 MAPRE2Q15555 327 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 HIKESHIQ53FT3 197 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 OR7E24Q6IFN5 339 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 WDR88Q6ZMY6 472 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 YTHDF3Q7Z739 585 aaKnown RBP14.3□□□□□ -0.12
LSM1-201ENST00000311351 CALHM3Q86XJ0 350 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 POU5F2Q8N7G0 328 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 POMGNT2Q8NAT1 580 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 C1orf162Q8NEQ5 155 aaPredicted RBP14.3□□□□□ -0.12
LSM1-201ENST00000311351 OR8J3Q8NGG0 315 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 Q96MF0 132 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 MOGAT1Q96PD6 335 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 ZNF317Q96PQ6 595 aaPredicted RBP14.3□□□□□ -0.12
LSM1-201ENST00000311351 EVA1AQ9H8M9 152 aa14.3□□□□□ -0.12
LSM1-201ENST00000311351 MAGED1Q9Y5V3 778 aaPredicted RBP14.3□□□□□ -0.12
LSM1-201ENST00000311351 TRAF3IP2O43734 574 aaPredicted RBP14.29□□□□□ -0.12
LSM1-201ENST00000311351 FMO6PO60774 539 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 KRT33AO76009 404 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 LYPD3O95274 346 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 HPRP00739 348 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 THY1P04216 161 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 C8BP07358 591 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 DANCRP0C864 163 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 ZNF43P17038 809 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 RPS4XP62701 263 aaKnown RBP14.29□□□□□ -0.12
LSM1-201ENST00000311351 IL1RL1Q01638 556 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 TGFBR3Q03167 851 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 PGGHGQ32M88 737 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 ENTPD8Q5MY95 495 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 SWT1Q5T5J6 900 aaKnown RBP14.29□□□□□ -0.12
LSM1-201ENST00000311351 INTS11Q5TA45 600 aaKnown RBP14.29□□□□□ -0.12
LSM1-201ENST00000311351 TMEM108Q6UXF1 575 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 SSX8Q7RTT4 187 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 C17orf78Q8N4C9 275 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 SLC26A7Q8TE54 656 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 SMAP2Q8WU79 429 aaPredicted RBP14.29□□□□□ -0.12
LSM1-201ENST00000311351 RCN3Q96D15 328 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 OXGR1Q96P68 337 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 SMR3AQ99954 134 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 ECSITQ9BQ95 431 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 CXorf56Q9H5V9 222 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 ZNF701Q9NV72 531 aaPredicted RBP14.29□□□□□ -0.12
LSM1-201ENST00000311351 TLN2Q9Y4G6 2542 aa14.29□□□□□ -0.12
LSM1-201ENST00000311351 TRIM64A6NGJ6 449 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 TRIM64BA6NI03 449 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 ZNF587BE7ETH6 402 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 CHP2O43745 196 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 NQO1P15559 274 aaKnown RBP14.28□□□□□ -0.12
LSM1-201ENST00000311351 TNFRSF1BP20333 461 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 CD40P25942 277 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 CDKN1AP38936 164 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 RIPPLY3P57055 190 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 C1DQ13901 141 aaKnown RBP14.28□□□□□ -0.12
LSM1-201ENST00000311351 ZNF613Q6PF04 617 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 KLHL17Q6TDP4 642 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 B3GLCTQ6Y288 498 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 H1FNTQ75WM6 255 aaPredicted RBP14.28□□□□□ -0.12
LSM1-201ENST00000311351 CCDC80Q76M96 950 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 ABHD12BQ7Z5M8 362 aaPredicted RBP14.28□□□□□ -0.12
LSM1-201ENST00000311351 CIARTQ8N365 385 aaPredicted RBP14.28□□□□□ -0.12
LSM1-201ENST00000311351 C10orf53Q8N6V4 93 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 OR1K1Q8NGR3 316 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 ADAMTS16Q8TE57 1224 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 SLC41A3Q96GZ6 507 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 EPYCQ99645 322 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 SH3GL1Q99961 368 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 TMEM43Q9BTV4 400 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 CISD1Q9NZ45 108 aaKnown RBP14.28□□□□□ -0.12
LSM1-201ENST00000311351 RCE1Q9Y256 329 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 B3GALT5Q9Y2C3 310 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 AMDHD2Q9Y303 409 aa14.28□□□□□ -0.12
LSM1-201ENST00000311351 ZANQ9Y493 2812 aa14.27□□□□□ -0.12
LSM1-201ENST00000311351 NSD1Q96L73 2696 aaPredicted RBP14.27□□□□□ -0.12
LSM1-201ENST00000311351 ZNF432O94892 652 aa14.27□□□□□ -0.13
LSM1-201ENST00000311351 HLA-DOBP13765 273 aa14.27□□□□□ -0.13
LSM1-201ENST00000311351 PTAFRP25105 342 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms