RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DBHP09172 617 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 IMPA1P29218 277 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 RABIFP47224 123 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 HCCSP53701 268 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 MRPS34P82930 218 aaKnown RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF74Q16587 644 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 PARS2Q7L3T8 475 aaKnown RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 OR14L1PQ8NHC6 308 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ABHD5Q8WTS1 349 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 C22orf15Q8WYQ4 148 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 DVL3Q92997 716 aaPredicted RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 C10orf90Q96M02 699 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 APOOQ9BUR5 198 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 PLEKHM1Q9Y4G2 1056 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 HRH3Q9Y5N1 445 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 PRAMEF27A3QJZ7 478 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 YY2O15391 372 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ZDHHC11BP0C7U3 371 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 CBR1P16152 277 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 TRIM23P36406 574 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ATP1B3P54709 279 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 UBE2NP61088 152 aaKnown RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 CRMP1Q14194 572 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 PRAMEF9Q5VWM5 478 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 MDGA2Q7Z553 956 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ADGRF3Q8IZF5 1079 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 OR2A12Q8NGT7 310 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 CPNE4Q96A23 557 aaPredicted RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM59Q9BXS4 323 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 SFXN1Q9H9B4 322 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 RARRES3Q9UL19 164 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 CORINQ9Y5Q5 1042 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 WIF1Q9Y5W5 379 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 M0QYG6 137 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF296Q8WUU4 475 aaPredicted RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF566Q969W8 418 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 C14orf79Q96F83 325 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 NIPSNAP3BQ9BS92 247 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 ZBTB42B2RXF5 422 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 GPX5O75715 221 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 ACTL6BO94805 426 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 TK1P04183 234 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 SRMP19623 302 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 SLCO4C1Q6ZQN7 724 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 RAB39BQ96DA2 213 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 BTF3L4Q96K17 158 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 CDCA4Q9BXL8 241 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 METTL9Q9H1A3 318 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 WDR76Q9H967 626 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 NDUFB11Q9NX14 153 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM200CA6NKL6 621 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 SULT2B1O00204 365 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 TAPBPO15533 448 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 F3P13726 295 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 ANXA7P20073 488 aaKnown RBP16.09■□□□□ 0.17
SYNPO-201ENST00000307662 PAQR9Q6ZVX9 377 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 PRICKLE2Q7Z3G6 844 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 OR10Z1Q8NGY1 313 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.09■□□□□ 0.17
SYNPO-201ENST00000307662 STARD5Q9NSY2 213 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 VIPR2P41587 438 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 PDZK1IP1Q13113 114 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 SCGB2A2Q13296 93 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 ALKBH1Q13686 389 aaKnown RBP16.09■□□□□ 0.17
SYNPO-201ENST00000307662 USP53Q70EK8 1073 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 FRMD1Q8N878 549 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 TAAR8Q969N4 342 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 ADOQ96SZ5 270 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 TGIF2Q9GZN2 237 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 DUSP21Q9H596 190 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 ANKRD12Q6UB98 2062 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 LRIT2A6NDA9 550 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 MAKP20794 623 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 PRDX1Q06830 199 aaKnown RBP16.09■□□□□ 0.17
SYNPO-201ENST00000307662 PLCXD3Q63HM9 321 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 KANSL1Q7Z3B3 1105 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 LINC00597Q9H2U6 94 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 POFUT1Q9H488 388 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 MDFIC2A0A1B0GVS7 189 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 BLACEA4D250 179 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 PRSS45Q7RTY3 260 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 GDF7Q7Z4P5 450 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM255BQ8WV15 326 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 GABARAPL3Q9BY60 117 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 IL23AQ9NPF7 189 aa16.09■□□□□ 0.17
SYNPO-201ENST00000307662 NUDT19A8MXV4 375 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 D6RAR5 112 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 NAGAP17050 411 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 MSR1P21757 451 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 OMGP23515 440 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 XCR1P46094 333 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 TEKQ02763 1124 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 SOWAHCQ53LP3 525 aaPredicted RBP16.08■□□□□ 0.17
SYNPO-201ENST00000307662 Q6ZTK2 550 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 HTR3DQ70Z44 454 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 C12orf76Q8N812 135 aaPredicted RBP16.08■□□□□ 0.17
SYNPO-201ENST00000307662 GPR78Q96P69 363 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 CDH20Q9HBT6 801 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 KPTNQ9Y664 436 aa16.08■□□□□ 0.17
SYNPO-201ENST00000307662 LOC100289279A0A1B0GTE1 492 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms