RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TRMT10AQ8TBZ6 339 aaKnown RBP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 TAAR8Q969N4 342 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ZC3HAV1LQ96H79 300 aaKnown RBP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 RNF121Q9H920 327 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 GRHPRQ9UBQ7 328 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ZNF221Q9UK13 617 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 MOKQ9UQ07 419 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 NPFFR2Q9Y5X5 522 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 FER1L5A0AVI2 2057 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 FAM171A2A8MVW0 826 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 CDC40O60508 579 aaKnown RBP eCLIP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 GATBO75879 557 aaKnown RBP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 HIST1H2ABP04908 130 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ABCD3P28288 659 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 GRPRP30550 384 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ARRB1P49407 418 aaPredicted RBP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 SHBQ15464 509 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 EMC4Q5J8M3 183 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 HIST3H2AQ7L7L0 130 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ZNF441Q8N8Z8 693 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 OR6F1Q8NGZ6 308 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 HIST1H2ACQ93077 130 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ELF4Q99607 663 aaPredicted RBP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 RBFOX1Q9NWB1 397 aaKnown RBP21.79■■□□□ 1.08
TRIM54-201ENST00000296098 SRPK3Q9UPE1 567 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 ASXL3Q9C0F0 2248 aa21.79■■□□□ 1.08
TRIM54-201ENST00000296098 C17orf51A8MQB3 221 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 GPRIN2O60269 458 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 NUDT14O95848 222 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 KRT8P05787 483 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 UCHL1P09936 223 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 PGCP20142 388 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 NPR2P20594 1047 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 PSMB10P40306 273 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 PNLIPRP2P54317 469 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 RPS11P62280 158 aaKnown RBP eCLIP21.78■■□□□ 1.08
TRIM54-201ENST00000296098 TOMM34Q15785 309 aaPredicted RBP21.78■■□□□ 1.08
TRIM54-201ENST00000296098 TRILQ7L0X0 811 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 SLC16A9Q7RTY1 509 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 EGFL6Q8IUX8 553 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 TSSK2Q96PF2 358 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 TSPAN32Q96QS1 320 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 KCNJ15Q99712 375 aa21.78■■□□□ 1.08
TRIM54-201ENST00000296098 LYRM1O43325 122 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 DCNP07585 359 aaKnown RBP21.77■■□□□ 1.08
TRIM54-201ENST00000296098 SF3A2Q15428 464 aaKnown RBP21.77■■□□□ 1.08
TRIM54-201ENST00000296098 POMZP3Q6PJE2 187 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 COX15Q7KZN9 410 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 SCAIQ8N9R8 606 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 RNF31Q96EP0 1072 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 FRMD6Q96NE9 622 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 OR14A2Q96R54 314 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 PDCD1LG2Q9BQ51 273 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 POU2F3Q9UKI9 436 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 UNC13CQ8NB66 2214 aa21.77■■□□□ 1.08
TRIM54-201ENST00000296098 A0A1W2PPK0 400 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 TMEM221A6NGB7 291 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 KHNYNO15037 678 aaKnown RBP21.77■■□□□ 1.07
TRIM54-201ENST00000296098 FLRT2O43155 660 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 TRAPPC2P0DI81 140 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 TRAPPC2BP0DI82 140 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 MESTQ5EB52 335 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 ATAD3CQ5T2N8 411 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 ZNF511Q8NB15 262 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 PLPP5Q8NEB5 264 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 RPS4Y2Q8TD47 263 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 FAM210AQ96ND0 272 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 SMAD5Q99717 465 aaKnown RBP21.77■■□□□ 1.07
TRIM54-201ENST00000296098 SLC7A5P2Q9GIP4 190 aa21.77■■□□□ 1.07
TRIM54-201ENST00000296098 TRAV36DV7A0A075B6V5 113 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 NOTOA8MTQ0 251 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 PAHP00439 452 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 BGLAPP02818 100 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 GP1BBP13224 206 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 CBFBQ13951 182 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 GPR139Q6DWJ6 353 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 PLET1Q6UQ28 207 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 SHISA6Q6ZSJ9 500 aa21.76■■□□□ 1.07
TRIM54-201ENST00000296098 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP21.76■■□□□ 1.07
TRIM54-201ENST00000296098 TOX3O15405 576 aaPredicted RBP21.75■■□□□ 1.07
TRIM54-201ENST00000296098 SCO2O43819 266 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 EVI2BP34910 448 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 PITPNBP48739 271 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 NKX2-5P52952 324 aaPredicted RBP21.75■■□□□ 1.07
TRIM54-201ENST00000296098 ZNF684Q5T5D7 378 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 HDHD2Q9H0R4 259 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 ZNF346Q9UL40 294 aaKnown RBP21.75■■□□□ 1.07
TRIM54-201ENST00000296098 HMX3A6NHT5 357 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 PRR32B1ATL7 298 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 H7C1C5 153 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 SLC25A12O75746 678 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 PSKH1P11801 424 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 DDOSTP39656 456 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 LCN6P62502 163 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 HSD17B12Q53GQ0 312 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 ZNF57Q68EA5 555 aaPredicted RBP21.75■■□□□ 1.07
TRIM54-201ENST00000296098 SLC6A19Q695T7 634 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 RHBDD2Q6NTF9 364 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 TMEM71Q6P5X7 295 aa21.75■■□□□ 1.07
TRIM54-201ENST00000296098 FAM220AQ7Z4H9 259 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms