RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 LFNGQ8NES3 379 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 RBM24Q9BX46 236 aaKnown RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 BABAM2Q9NXR7 383 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 CHRNA9Q9UGM1 479 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 GABRQQ9UN88 632 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 PKDREJQ9NTG1 2253 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 GABRR3A8MPY1 467 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 HOXD9P28356 352 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 TCTE1Q5JU00 501 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 Q6ZNX1 250 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 CPXM2Q8N436 756 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 RNF141Q8WVD5 230 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 DPH7Q9BTV6 452 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 OR51B6Q9H340 312 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 KCMF1Q9P0J7 381 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SH3BGRL2Q9UJC5 107 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 CRABP1P29762 137 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SRPXP78539 464 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 FAM180BQ6P0A1 224 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SIGLECL1Q8N7X8 197 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 OR1S2Q8NGQ3 325 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 NAA50Q9GZZ1 169 aaKnown RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 USP36Q9P275 1121 aaKnown RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 ANKUB1A6NFN9 424 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SOCS6O14544 535 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 IGFBP1P08833 259 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 ARSAP15289 507 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 TNFSF8P32971 234 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 IRF4Q15306 451 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 LINC00299Q6ZSB3 139 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 C20orf85Q9H1P6 137 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 PGAP2Q9UHJ9 254 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 OSGIN1Q9UJX0 560 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 FAM155AB1AL88 458 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 B4DXG7 233 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 HOXD11P31277 338 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 PRLHRP49683 370 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 RAB28P51157 221 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 EFNA3P52797 238 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 AFMIDQ63HM1 303 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 DNAJB11Q9UBS4 358 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 TNFSF4P23510 183 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 FCER1GP30273 86 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 STEAP3Q658P3 488 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 OR5L2Q8NGL0 311 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 KIAA1143Q96AT1 154 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF583Q96ND8 569 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 MTHFD2LQ9H903 347 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-201ENST00000295550 CUTCQ9NTM9 273 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 GPR34Q9UPC5 381 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 FAM227AF5H4B4 570 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 PSMB3P49720 205 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 HORMAD2Q8N7B1 307 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SUCNR1Q9BXA5 334 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 GABARAPL1Q9H0R8 117 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 CXCL16Q9H2A7 254 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SLC39A9Q9NUM3 307 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF281Q9Y2X9 895 aa9.19□□□□□ -0.94
COL6A3-201ENST00000295550 SMAD6O43541 496 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ITGB7P26010 798 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 OPCMLQ14982 345 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 DBX2Q6ZNG2 339 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 OR4C5Q8NGB2 326 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 NEIL2Q969S2 332 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 FBXL2Q9UKC9 423 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 PLXNA1Q9UIW2 1896 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 C21orf33P30042 268 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CNN3Q15417 329 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 HBMQ6B0K9 141 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 TMEM151BQ8IW70 566 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 REEP6Q96HR9 211 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 OR5B2Q96R09 309 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 KATNB1Q9BVA0 655 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 C1QTNF3Q9BXJ4 246 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 LRIT2A6NDA9 550 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 XRCC3O43542 346 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 TRA2BP62995 288 aaKnown RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ARHGAP11BQ3KRB8 267 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 FRMD1Q8N878 549 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 PNPLA1Q8N8W4 532 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 C2CD4CQ8TF44 421 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 SLC6A14Q9UN76 642 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 OR2T1O43869 369 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ADRB1P08588 477 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CST5P28325 142 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 KIAA0141Q14154 515 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 LANCL3Q6ZV70 420 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 USP51Q70EK9 711 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CASD1Q96PB1 797 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 TSSK2Q96PF2 358 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 HRH3Q9Y5N1 445 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF587BE7ETH6 402 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 SEC14L5O43304 696 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 SLC10A3P09131 477 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 ACRP10323 421 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 CD79AP11912 226 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 SFTPDP35247 375 aa9.18□□□□□ -0.94
COL6A3-201ENST00000295550 MLLT11Q13015 90 aaPredicted RBP9.18□□□□□ -0.94
COL6A3-201ENST00000295550 HNF4GQ14541 408 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms