RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ARHGAP11AQ6P4F7 1023 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 ZNF511Q8NB15 262 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 SMPDL3BQ92485 455 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 TRMT61AQ96FX7 289 aaKnown RBP14.9□□□□□ -0.02
USP4-201ENST00000265560 CRELD1Q96HD1 420 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 HIF3AQ9Y2N7 669 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 SLC6A5Q9Y345 797 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 CCDC182A6NF36 153 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 A8MVM7 634 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 ARHGEF9O43307 516 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 AHCYL1O43865 530 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 KLK2P20151 261 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 RFC3P40938 356 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 MELKQ14680 651 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 OPN5Q6U736 354 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 POC1BQ8TC44 478 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 TMEM234Q8WY98 164 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 TSPAN32Q96QS1 320 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 TM9SF2Q99805 663 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 PROK2Q9HC23 129 aa14.9□□□□□ -0.02
USP4-201ENST00000265560 NCKAP5O14513 1909 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 M0R3G1 203 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 TP53I11O14683 189 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 IFNGP01579 166 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 PRPS1P60891 318 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 FAM69AQ5T7M9 428 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 SPINK14Q6IE38 97 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 SSX6Q7RTT6 188 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 ZNF367Q7RTV3 350 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 BEST3Q8N1M1 668 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 OR2M3Q8NG83 312 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 GRHPRQ9UBQ7 328 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 STMND1H3BQB6 276 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 ZNF701M0R085 212 aaPredicted RBP14.89□□□□□ -0.03
USP4-201ENST00000265560 AKR7A3O95154 331 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 CD14P08571 375 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 UQCRC1P31930 480 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 PLPPR5Q32ZL2 321 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 ACER2Q5QJU3 275 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 PLEKHG7Q6ZR37 379 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 LINC00696Q6ZRV3 163 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 KLBQ86Z14 1044 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 MISPQ8IVT2 679 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 LRRC75AQ8NAA5 344 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 PROKR2Q8NFJ6 384 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 C9orf43Q8TAL5 461 aaPredicted RBP14.89□□□□□ -0.03
USP4-201ENST00000265560 SPRYD4Q8WW59 207 aaPredicted RBP14.89□□□□□ -0.03
USP4-201ENST00000265560 SMAD5Q99717 465 aaKnown RBP14.89□□□□□ -0.03
USP4-201ENST00000265560 GPN2Q9H9Y4 310 aaPredicted RBP14.89□□□□□ -0.03
USP4-201ENST00000265560 ERVK13-1Q9NX77 482 aa14.89□□□□□ -0.03
USP4-201ENST00000265560 RP1L1Q8IWN7 2480 aaPredicted RBP14.89□□□□□ -0.03
USP4-201ENST00000265560 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 SELENOFO60613 162 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 NPIPB7O75200 414 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 GPX5O75715 221 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 AHSA1O95433 338 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 EIF3IQ13347 325 aaKnown RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 SLC22A10Q63ZE4 541 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ATCAYQ86WG3 371 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 WDFY1Q8IWB7 410 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 GALNT15Q8N3T1 639 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 OIT3Q8WWZ8 545 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 PSMF1Q92530 271 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 FGF20Q9NP95 211 aaPredicted RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 PLA2G3Q9NZ20 509 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 STMN3Q9NZ72 180 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 DSPP15924 2871 aaKnown RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 TVP23AA6NH52 213 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ITGA3P26006 1051 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 RUNX1T1Q06455 604 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 MESTQ5EB52 335 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 RPTNQ6XPR3 784 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 SYT14Q8NB59 555 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 NKD1Q969G9 470 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ZHX1-C8orf76Q96EF9 292 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ZNF649Q9BS31 505 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 SYT4Q9H2B2 425 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 CCRL2O00421 344 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 PRKAR1AP10644 381 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ENDOUP21128 410 aaKnown RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 SLC2A5P22732 501 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 WNT4P56705 351 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 C1DQ13901 141 aaKnown RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 MAMDC2Q7Z304 686 aaPredicted RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 FAM122BQ7Z309 247 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 GID4Q8IVV7 300 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ADGRL4Q9HBW9 690 aa14.88□□□□□ -0.03
USP4-201ENST00000265560 ING1Q9UK53 422 aaPredicted RBP14.88□□□□□ -0.03
USP4-201ENST00000265560 ANKRD11Q6UB99 2663 aaPredicted RBP14.87□□□□□ -0.03
USP4-201ENST00000265560 DAPL1A0PJW8 107 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 H0YC42 278 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 DVL2O14641 736 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 OR6A2O95222 327 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 SCG5P05408 212 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 CELP19835 753 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 CENPAP49450 140 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 ACKR1Q16570 336 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 JAZF1Q86VZ6 243 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 PM20D2Q8IYS1 436 aa14.87□□□□□ -0.03
USP4-201ENST00000265560 C5orf34Q96MH7 638 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms