RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RNF44Q7L0R7 432 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 OR2W3Q7Z3T1 314 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 AMZ2Q86W34 360 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 LNX2Q8N448 690 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 OR10AC1Q8NH08 325 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 TINAGL1Q9GZM7 467 aaPredicted RBP13.18□□□□□ -0.3
SDC1-201ENST00000254351 CTSFQ9UBX1 484 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 FAM96BQ9Y3D0 163 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 A0A0A6YYD5 115 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 KANTRA0A1W2PQU2 76 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 CCL16O15467 120 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 OR2T1O43869 369 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 CPN1P15169 458 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 FRKP42685 505 aaPredicted RBP13.18□□□□□ -0.3
SDC1-201ENST00000254351 SLC35F2Q8IXU6 374 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 OR51A4Q8NGJ6 313 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 NUS1Q96E22 293 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 TCEAL4Q96EI5 215 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 SLITRK2Q9H156 845 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 MRPS30Q9NP92 439 aaKnown RBP13.18□□□□□ -0.3
SDC1-201ENST00000254351 KCNK6Q9Y257 313 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 SLC35A3Q9Y2D2 325 aa13.18□□□□□ -0.3
SDC1-201ENST00000254351 IGKV1-8A0A0C4DH67 115 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ZNF879B4DU55 563 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ABCD4O14678 606 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 LILRB5O75023 590 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 EIF3GO75821 320 aaKnown RBP eCLIP13.17□□□□□ -0.3
SDC1-201ENST00000254351 CRYBA1P05813 215 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 HIST1H1TP22492 207 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 MPGP29372 298 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 AQP2P41181 271 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 POLR2GP62487 172 aaKnown RBP eCLIP13.17□□□□□ -0.3
SDC1-201ENST00000254351 PPP2CBP62714 309 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 PPP2CAP67775 309 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 PAN3Q58A45 887 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 RHOUQ7L0Q8 258 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 TMEM17Q86X19 198 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 MCATQ8IVS2 390 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 OR56A1Q8NGH5 318 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 CASTOR1Q8WTX7 329 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 KRCC1Q9NPI7 259 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 DHCR7Q9UBM7 475 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 SIGLEC7Q9Y286 467 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 OR1A2Q9Y585 309 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 PRR32B1ATL7 298 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 NDUFS6O75380 124 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 RCBTB2O95199 551 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 PAK4O96013 591 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 ANXA2P07355 339 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 GAAP10253 952 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ADCYAP1P18509 176 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 HOXA1P49639 335 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 VASPP50552 380 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 ZNF136P52737 540 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 TGIF1Q15583 401 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 H3F3CQ6NXT2 135 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ETV3LQ6ZN32 361 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 RANBP3LQ86VV4 465 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 C12orf45Q8N5I9 185 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 OR14A16Q8NHC5 309 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 NKD1Q969G9 470 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 RASD2Q96D21 266 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 IGSF21Q96ID5 467 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 TLNRD1Q9H1K6 362 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 SYNDIG1Q9H7V2 258 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 C14orf105Q9NVL8 296 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 COA4Q9NYJ1 87 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 IKZF2Q9UKS7 526 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 CDV3Q9UKY7 258 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 MED31Q9Y3C7 131 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ZNF106Q9H2Y7 1883 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 TRAV1-2A0A0B4J238 106 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 TRAPPC13A5PLN9 417 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 H7C1C5 153 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ACOT7O00154 380 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 PRKNO60260 465 aaPredicted RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 ZNF254O75437 659 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 ABLIM3O94929 683 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 NDUFS1P28331 727 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 NPBWR1P48145 328 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 LCN6P62502 163 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 TDGQ13569 410 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 NNATQ16517 81 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 DCUN1D3Q8IWE4 304 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 STEAP2Q8NFT2 490 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 SETD7Q8WTS6 366 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 CRISPLD2Q9H0B8 497 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 OR52A5Q9H2C5 316 aa13.17□□□□□ -0.3
SDC1-201ENST00000254351 NOP16Q9Y3C1 178 aaKnown RBP13.17□□□□□ -0.3
SDC1-201ENST00000254351 TRAV14DV4A0A0A6YYC5 116 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 RPN2P04844 631 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 LTBQ06643 244 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 SQSTM1Q13501 440 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 ZNF234Q14588 700 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 TRAM1Q15629 374 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 HTR3DQ70Z44 454 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 RAB11FIP2Q7L804 512 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 CNN2Q99439 309 aaKnown RBP13.16□□□□□ -0.3
SDC1-201ENST00000254351 NIT2Q9NQR4 276 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 TVP23AA6NH52 213 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms