RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 STC2O76061 302 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 HOXB3P14651 431 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SUOXP51687 545 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MXD1Q05195 221 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PLCXD2Q0VAA5 305 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FAM71F2Q6NXP2 309 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF343Q6P1L6 599 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ABHD17CQ6PCB6 329 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CXXC5Q7LFL8 322 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ADGRG3Q86Y34 549 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF444Q8N0Y2 327 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR8G5Q8NG78 346 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IL12RB2Q99665 862 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 HDHD5Q9BXW7 423 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ABHD16BQ9H3Z7 469 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 DOK5Q9P104 306 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TUBD1Q9UJT1 453 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TFR2Q9UP52 801 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 B3GALT1Q9Y5Z6 326 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SLC43A1O75387 559 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PIAS1O75925 651 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 DIRAS1O95057 198 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 YIF1AO95070 293 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ATP5A1P25705 553 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CHRFAM7AQ494W8 412 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 Q6ZN92 141 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM179Q6ZVK1 233 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 G2E3Q7L622 706 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MRGPRGQ86SM5 289 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ARL14EPQ8N8R7 260 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM186Q96B77 213 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 HSH2DQ96JZ2 352 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PRMT6Q96LA8 375 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LPAR2Q9HBW0 351 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GALNT9Q9HCQ5 603 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF106Q9H2Y7 1883 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 UNC119BA6NIH7 251 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FZD9O00144 591 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LDB2O43679 373 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ICAM1P05362 532 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD34CP0C6C1 535 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ELNP15502 786 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 EDN2P20800 178 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FRKP42685 505 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 BAXQ07812 192 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CDH18Q13634 790 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD55Q3KP44 614 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SLC39A5Q6ZMH5 540 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 BLIDQ8IZY5 108 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SLC5A8Q8N695 610 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF709Q8N972 641 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR10X1Q8NGY0 326 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM239Q8WW34 195 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 COL21A1Q96P44 957 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SDCBP2Q9H190 292 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FBXL15Q9H469 300 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MAP1LC3AQ9H492 121 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LYRM2Q9NU23 88 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 HSPB8Q9UJY1 196 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TAF6LQ9Y6J9 622 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 NPATQ14207 1427 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PSMB11A5LHX3 300 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ATP6AP2O75787 350 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 C8BP07358 591 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SSTR4P31391 388 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PNLIPRP2P54317 469 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 RANP62826 216 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IRF9Q00978 393 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TROAPQ12815 778 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 NKPD1Q17RQ9 610 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MBOAT1Q6ZNC8 495 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 C14orf144Q96I85 54 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM47Q9BQJ4 181 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 C1QTNF6Q9BXI9 259 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 POLDIP3Q9BY77 421 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TCEAL2Q9H3H9 227 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 WDR76Q9H967 626 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 KCNIP1Q9NZI2 227 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CLEC1BQ9P126 229 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PPIL1Q9Y3C6 166 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ANKRD17O75179 2603 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 A0A0U1RQV5 110 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GSC2O15499 205 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SNX3O60493 162 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ANXA2P07355 339 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MAOAP21397 527 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 ID3Q02535 119 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GINS1Q14691 196 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MICBQ29980 383 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GSG1LQ6UXU4 331 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 Q7L0L9 218 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 IRF2BP1Q8IU81 584 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 OR5W2Q8NH69 310 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PAAF1Q9BRP4 392 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 DERL1Q9BUN8 251 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 LHPPQ9H008 270 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 EPHA6Q9UF33 1036 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 V9GYS6 101 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 POLR1AO95602 1720 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 UPK3BL1B0FP48 263 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms