RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TCN1P20061 433 aaPredicted RBP16.99■□□□□ 0.31
CLN3-260ENST00000637578 IDUAP35475 653 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 HOXC5Q00444 222 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 BNIP2Q12982 314 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 CEACAM7Q14002 265 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 GLIPR1L2Q4G1C9 344 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.99■□□□□ 0.31
CLN3-260ENST00000637578 WFDC8Q8IUA0 241 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 ZNF433Q8N7K0 673 aaPredicted RBP16.99■□□□□ 0.31
CLN3-260ENST00000637578 STK35Q8TDR2 534 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 IGFBPL1Q8WX77 278 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 APH1AQ96BI3 265 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 PLPPR2Q96GM1 343 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.99■□□□□ 0.31
CLN3-260ENST00000637578 MALT1Q9UDY8 824 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 EGFL7Q9UHF1 273 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 FLVCR1Q9Y5Y0 555 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 ZNF469Q96JG9 3925 aaPredicted RBP16.99■□□□□ 0.31
CLN3-260ENST00000637578 AQP7P3A6NL99 342 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 LYZL6O75951 148 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 NCK1P16333 377 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 HOXC12P31275 282 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 KDELR2P33947 212 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 MSX2P35548 267 aaPredicted RBP16.98■□□□□ 0.31
CLN3-260ENST00000637578 P2RY4P51582 365 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 ADAM8P78325 824 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 DUSP7Q16829 419 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 LRRC23Q53EV4 343 aaPredicted RBP16.98■□□□□ 0.31
CLN3-260ENST00000637578 C20orf204Q6ZNR8 217 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 PIGTQ969N2 578 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 SF3B5Q9BWJ5 86 aaKnown RBP16.98■□□□□ 0.31
CLN3-260ENST00000637578 C12orf10Q9HB07 376 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 RAI1Q7Z5J4 1906 aaPredicted RBP16.98■□□□□ 0.31
CLN3-260ENST00000637578 ROS1P08922 2347 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 FZD7O75084 574 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 MRPL33O75394 65 aaKnown RBP16.98■□□□□ 0.31
CLN3-260ENST00000637578 GGT1P19440 569 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 CD247P20963 164 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 EGR4Q05215 589 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 OR7A5Q15622 319 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 C1orf140Q5VVS0 124 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 ZNF704Q6ZNC4 412 aaPredicted RBP16.98■□□□□ 0.31
CLN3-260ENST00000637578 P2RY8Q86VZ1 359 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 TMEM99Q8N816 258 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 ZIC4Q8N9L1 334 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 GPR32P1Q8NGA4 272 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 SLC26A7Q8TE54 656 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 UBTD1Q9HAC8 227 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 SLC9A8Q9Y2E8 581 aa16.98■□□□□ 0.31
CLN3-260ENST00000637578 PDLIM1O00151 329 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 GYG2O15488 501 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 AKR7A3O95154 331 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 PLAUP00749 431 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 HTR2AP28223 471 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 FXNQ16595 210 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 SPATS1Q496A3 300 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 DNAL1Q4LDG9 190 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 TIMM23BQ5SRD1 257 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 NCMAPQ5T1S8 102 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 OTUD3Q5T2D3 398 aaPredicted RBP16.97■□□□□ 0.31
CLN3-260ENST00000637578 ADAM5Q6NVV9 412 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 SSX8Q7RTT4 187 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 KRTAP1-3Q8IUG1 177 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 ARHGAP24Q8N264 748 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 BHLHE22Q8NFJ8 381 aaPredicted RBP16.97■□□□□ 0.31
CLN3-260ENST00000637578 TMEM45BQ96B21 275 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 NGBQ9NPG2 151 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 PARPBPQ9NWS1 579 aa16.97■□□□□ 0.31
CLN3-260ENST00000637578 PRPF19Q9UMS4 504 aaKnown RBP16.97■□□□□ 0.31
CLN3-260ENST00000637578 FTCDNL1E5RQL4 147 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 PDE5AO76074 875 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 CYBRD1Q53TN4 286 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 LRRC75A-AS1Q8N1F1 130 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 MFSD8Q8NHS3 518 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 CLPTM1LQ96KA5 538 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 WFDC6Q9BQY6 131 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 BTBD10Q9BSF8 475 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 THTPAQ9BU02 230 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 PTDSS2Q9BVG9 487 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 TAPBPLQ9BX59 468 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 EVA1AQ9H8M9 152 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 ASB6Q9NWX5 421 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 SLC13A4Q9UKG4 626 aa16.96■□□□□ 0.31
CLN3-260ENST00000637578 ATP5HO75947 161 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 IFNA14P01570 189 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 IGHV3-9P01782 118 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 CD99P14209 185 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 GLYATQ6IB77 296 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 UBE2J2Q8N2K1 259 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 OR9K2Q8NGE7 335 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 LILRB1Q8NHL6 650 aaPredicted RBP16.95■□□□□ 0.3
CLN3-260ENST00000637578 DNAJA4Q8WW22 397 aaPredicted RBP16.95■□□□□ 0.3
CLN3-260ENST00000637578 RASSF5Q8WWW0 418 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 MUS81Q96NY9 551 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 TRIM2Q9C040 744 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 AMBRA1Q9C0C7 1298 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 PCDHAC1Q9H158 963 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 DLL4Q9NR61 685 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 TAS2R16Q9NYV7 291 aa16.95■□□□□ 0.3
CLN3-260ENST00000637578 VPS13CQ709C8 3753 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms