RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PLTPP55058 493 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 ROR2Q01974 943 aaKnown RBP12.38□□□□□ -0.43
CLN3-249ENST00000636685 PDE7AQ13946 482 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 MAPK14Q16539 360 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 NIPAL3Q6P499 406 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 EMBQ6PCB8 327 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 TRIM46Q7Z4K8 759 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 RETREG3Q86VR2 466 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 DEFB108BQ8NET1 73 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 IL17RDQ8NFM7 739 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 POP5Q969H6 163 aaKnown RBP12.38□□□□□ -0.43
CLN3-249ENST00000636685 DDIT4LQ96D03 193 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 MS4A3Q96HJ5 214 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 OR7D2Q96RA2 312 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 SF3B5Q9BWJ5 86 aaKnown RBP12.38□□□□□ -0.43
CLN3-249ENST00000636685 BEX1Q9HBH7 125 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 MID1IP1Q9NPA3 183 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 BAIAP2L1Q9UHR4 511 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 MKLN1Q9UL63 735 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 PCDHGB4Q9UN71 923 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 STK38LQ9Y2H1 464 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 TMED7Q9Y3B3 224 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 A0A1B0GUS0 222 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 A0A1W2PPW3 197 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 TRIM49D1C9J1S8 452 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 CCDC188H7C350 402 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 SDC1P18827 310 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 TAC1P20366 129 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 GLRXP35754 106 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 CAPZA2P47755 286 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 IDH2P48735 452 aaKnown RBP12.37□□□□□ -0.43
CLN3-249ENST00000636685 ATP4BP51164 291 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 SH3BGRP55822 239 aaPredicted RBP12.37□□□□□ -0.43
CLN3-249ENST00000636685 CCL8P80075 99 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 CEACAM7Q14002 265 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 BEAN1Q3B7T3 259 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 OLFML2AQ68BL7 652 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 JAZF1Q86VZ6 243 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 FAM71CQ8NEG0 241 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 FAM110DQ8TAY7 271 aaPredicted RBP12.37□□□□□ -0.43
CLN3-249ENST00000636685 DUSP13Q9UII6 198 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 CCL27Q9Y4X3 112 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 NOX1Q9Y5S8 564 aa12.37□□□□□ -0.43
CLN3-249ENST00000636685 SLC22A31A6NKX4 558 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 AQP7P3A6NL99 342 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 ZNF208O43345 1280 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 KRT16P08779 473 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 RAG2P55895 527 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 OR7A5Q15622 319 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 SPDYE7PQ495Y7 208 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 GLIPR1L2Q4G1C9 344 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 CREB3L2Q70SY1 520 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 OR56A1Q8NGH5 318 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 OR4F5Q8NH21 305 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 FBXO25Q8TCJ0 367 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 GSTO2Q9H4Y5 243 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 PIF1Q9H611 641 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 MMP26Q9NRE1 261 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 LEF1Q9UJU2 399 aaPredicted RBP12.36□□□□□ -0.43
CLN3-249ENST00000636685 OSGIN1Q9UJX0 560 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 ZNF346Q9UL40 294 aaKnown RBP12.36□□□□□ -0.43
CLN3-249ENST00000636685 CACNG2Q9Y698 323 aa12.36□□□□□ -0.43
CLN3-249ENST00000636685 EPPK1P58107 5090 aaKnown RBP12.35□□□□□ -0.43
CLN3-249ENST00000636685 FAM181BA6NEQ2 426 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 LIPT2A6NK58 231 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 G3V4G9 280 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 AP3D1O14617 1153 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 SEC14L2O76054 403 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 ZNF35P13682 527 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 CRYBB2P43320 205 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 RPS26P62854 115 aaKnown RBP12.35□□□□□ -0.43
CLN3-249ENST00000636685 RELBQ01201 579 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 GKAP1Q5VSY0 366 aaPredicted RBP12.35□□□□□ -0.43
CLN3-249ENST00000636685 TMEM225Q6GV28 225 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 HMGN2P46Q86SG4 172 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 EPHX4Q8IUS5 362 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 GLB1L3Q8NCI6 653 aaPredicted RBP12.35□□□□□ -0.43
CLN3-249ENST00000636685 PMM1Q92871 262 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 ZNF837Q96EG3 531 aaPredicted RBP12.35□□□□□ -0.43
CLN3-249ENST00000636685 CCT7Q99832 543 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 GAL3ST1Q99999 423 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 LINC00470Q9BZP3 86 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 MS4A7Q9GZW8 240 aaPredicted RBP12.35□□□□□ -0.43
CLN3-249ENST00000636685 TNFRSF12AQ9NP84 129 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 AUP1Q9Y679 476 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 DNAH3Q8TD57 4116 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 PLXNB1O43157 2135 aa12.35□□□□□ -0.43
CLN3-249ENST00000636685 IGHV3OR16-10A0A075B7F0 116 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 IGHV1-69-2A0A0G2JMI3 117 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 MDFIC2A0A1B0GVS7 189 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 CLDN25C9JDP6 229 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 STX11O75558 287 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 ZNF432O94892 652 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 GPIP06744 558 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 SELEP16581 610 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 ATP5F1P24539 256 aaPredicted RBP12.34□□□□□ -0.43
CLN3-249ENST00000636685 TACR3P29371 465 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 HTR3AP46098 478 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 P2RY4P51582 365 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 POLR2HP52434 150 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms