RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 GTF2E2P29084 291 aaKnown RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 SRD5A2P31213 254 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 RPL4P36578 427 aaKnown RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 RPS5P46782 204 aaKnown RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 CENPAP49450 140 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ACTC1P68032 377 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ACTA1P68133 377 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 RPL18Q07020 188 aaKnown RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 LGALS3BPQ08380 585 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ZP4Q12836 540 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 PMS2P3Q13401 168 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 CAMK2BQ13554 666 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 GGTLC2Q14390 218 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ZNF239Q16600 458 aaKnown RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 BEST3Q8N1M1 668 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 C10orf53Q8N6V4 93 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 LRRC75AQ8NAA5 344 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 POMGNT2Q8NAT1 580 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 PROKR2Q8NFJ6 384 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 OR1J4Q8NGS1 313 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 SGCDQ92629 289 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 MOGAT1Q96PD6 335 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ERMAPQ96PL5 475 aaPredicted RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 KLHDC3Q9BQ90 382 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 RHNO1Q9BSD3 238 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 KATNB1Q9BVA0 655 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 TAPBPLQ9BX59 468 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 DLL3Q9NYJ7 618 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 PTTG2Q9NZH5 202 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 IL17BQ9UHF5 180 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 ERGIC3Q9Y282 383 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 B3GALT5Q9Y2C3 310 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 EXOGQ9Y2C4 368 aaKnown RBP9.56□□□□□ -0.88
CLN3-248ENST00000636355 CEPT1Q9Y6K0 416 aa9.56□□□□□ -0.88
CLN3-248ENST00000636355 CFAP54Q96N23 3096 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 DMXL1Q9Y485 3027 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 TRIM64BA6NI03 449 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 ZNF891A8MT65 544 aaPredicted RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 B4DXG7 233 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 MYL12BO14950 172 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 AHCYL1O43865 530 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 TRMUO75648 421 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 SLC2A5P22732 501 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 DPP4P27487 766 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 DAP3P51398 398 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 SLC25A1P53007 311 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 GP2P55259 537 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.55□□□□□ -0.88
CLN3-248ENST00000636355 PUDPQ08623 228 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 CRMP1Q14194 572 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 TBC1D25Q3MII6 688 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 TIMM50Q3ZCQ8 353 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 PRAMEF20Q5VT98 475 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 FCRLBQ6BAA4 426 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 ARSKQ6UWY0 536 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 MEPCEQ7L2J0 689 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 EGFL6Q8IUX8 553 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 SIRT6Q8N6T7 355 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 ZNF524Q96C55 264 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 LGALS12Q96DT0 336 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 COG8Q96MW5 612 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 FAM173AQ9BQD7 235 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 PIGQQ9BRB3 760 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 UTP23Q9BRU9 249 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 NMNAT2Q9BZQ4 307 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 PROK2Q9HC23 129 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 ISYNA1Q9NPH2 558 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 CHCHD3Q9NX63 227 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 B4GALT7Q9UBV7 327 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 AASSQ9UDR5 926 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 DKKL1Q9UK85 242 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 FBXL2Q9UKC9 423 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 VDAC3Q9Y277 283 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 TRAPPC4Q9Y296 219 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 GPR52Q9Y2T5 361 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 MRPS18BQ9Y676 258 aaKnown RBP9.55□□□□□ -0.88
CLN3-248ENST00000636355 COMMD3-BMI1R4GMX3 469 aa9.55□□□□□ -0.88
CLN3-248ENST00000636355 ZC3H12DA2A288 527 aaKnown RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 A6NIZ1 184 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 LIPT2A6NK58 231 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 C17orf51A8MQB3 221 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 BLOC1S5-TXNDC5H3BN57 136 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 GABARAPO95166 117 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 PMS2P2O95744 297 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 STSP08842 583 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 PSMB9P28065 219 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 C21orf33P30042 268 aaPredicted RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 AQP2P41181 271 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 BLVRAP53004 296 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 RAP1BP61224 184 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 RAP1AP62834 184 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 BDH1Q02338 343 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 ITGADQ13349 1161 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 KRR1Q13601 381 aaKnown RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 ZNF362Q5T0B9 420 aaPredicted RBP9.54□□□□□ -0.88
CLN3-248ENST00000636355 SLC6A19Q695T7 634 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 OR5M10Q6IEU7 315 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 PLBD1Q6P4A8 553 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 TUBA3EQ6PEY2 450 aa9.54□□□□□ -0.88
CLN3-248ENST00000636355 B3GNT6Q6ZMB0 384 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms