RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 OR1Q1Q15612 314 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 SGCBQ16585 318 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 FGD3Q5JSP0 725 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 CBLN3Q6UW01 205 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 SPNS3Q6ZMD2 512 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 ZNF550Q7Z398 422 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 LUZP2Q86TE4 346 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 OR10G2Q8NGC3 310 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 OR9Q2Q8NGE9 314 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 OR5M1Q8NGP8 315 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 ADAMTS16Q8TE57 1224 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 DNAJC9Q8WXX5 260 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 NINJ1Q92982 152 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 SLC35B4Q969S0 331 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 STARD4Q96DR4 205 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 SLC41A3Q96GZ6 507 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 ZNF184Q99676 751 aaPredicted RBP11.32□□□□□ -0.6
PNKP-217ENST00000625216 FNDC11Q9BVV2 318 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 OSBPL10Q9BXB5 764 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 CLEC4MQ9H2X3 399 aaPredicted RBP11.32□□□□□ -0.6
PNKP-217ENST00000625216 VCXQ9H320 206 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 RNF122Q9H9V4 155 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 EXOSC3Q9NQT5 275 aaKnown RBP11.32□□□□□ -0.6
PNKP-217ENST00000625216 NDRG3Q9UGV2 375 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 TMEFF2Q9UIK5 374 aaPredicted RBP11.32□□□□□ -0.6
PNKP-217ENST00000625216 CARD8Q9Y2G2 431 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 MPDZO75970 2070 aa11.32□□□□□ -0.6
PNKP-217ENST00000625216 A0A1W2PRQ8 180 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 H0YC42 278 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 GTPBP1O00178 669 aaKnown RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 ZNF264O43296 627 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 GMFGO60234 142 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 CCNB2O95067 398 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 CD8BP10966 210 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 KIR2DL2P43627 348 aaPredicted RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 P2RX1P51575 399 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 TPD52P55327 224 aaPredicted RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 DGCR6Q14129 220 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 GK3PQ14409 553 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PON3Q15166 354 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PLPPR5Q32ZL2 321 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PDSS1Q5T2R2 415 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 FAHD1Q6P587 224 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PODNL1Q6PEZ8 512 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PLXDC2Q6UX71 529 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 ESPNLQ6ZVH7 1005 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 GGNQ86UU5 652 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 NKAIN4Q8IVV8 208 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 ZNF440Q8IYI8 595 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 TMCO5AQ8N6Q1 288 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 CNEP1R1Q8N9A8 125 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 LINC01560Q8TB33 94 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 FNDC9Q8TBE3 224 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 SLC7A13Q8TCU3 470 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 MAGEE2Q8TD90 523 aaPredicted RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 GIPC3Q8TF64 312 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 SMPDL3BQ92485 455 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 ZNF524Q96C55 264 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 SH3YL1Q96HL8 342 aaPredicted RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 ALPK1Q96QP1 1244 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PSD2Q9BQI7 771 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PRSS27Q9BQR3 290 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 PRRG4Q9BZD6 226 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 POLR2J2Q9GZM3 115 aaKnown RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 LAT2Q9GZY6 243 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 POLR2J3Q9H1A7 115 aaKnown RBP11.31□□□□□ -0.6
PNKP-217ENST00000625216 C8orf4Q9NR00 106 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 GALNT8Q9NY28 637 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 ELOVL5Q9NYP7 299 aa11.31□□□□□ -0.6
PNKP-217ENST00000625216 A0A0B4J2E0 115 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 A0A1B0GWA3 101 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 A0A1B0GX12 115 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 SH3PXD2BA1X283 911 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 TRAPPC13A5PLN9 417 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 ARRDC5A6NEK1 342 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 H0YJX3 145 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 FAAHO00519 579 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 EIF1AYO14602 144 aaKnown RBP11.3□□□□□ -0.6
PNKP-217ENST00000625216 CASKO14936 926 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 EIF4E2O60573 245 aaKnown RBP11.3□□□□□ -0.6
PNKP-217ENST00000625216 MITFO75030 526 aaPredicted RBP11.3□□□□□ -0.6
PNKP-217ENST00000625216 SMNDC1O75940 238 aaKnown RBP eCLIP11.3□□□□□ -0.6
PNKP-217ENST00000625216 LINGO3P0C6S8 592 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 PTNP21246 168 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 CBLP22681 906 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 ELK4P28324 431 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 RYKP34925 604 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 EIF1AXP47813 144 aaKnown RBP11.3□□□□□ -0.6
PNKP-217ENST00000625216 DAPP51397 102 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 CCR4P51679 360 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 SMIM11AP58511 58 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 LSM11P83369 360 aaKnown RBP eCLIP11.3□□□□□ -0.6
PNKP-217ENST00000625216 ST3GAL3Q11203 375 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 TRAM2Q15035 370 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 MICAQ29983 383 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 KDM4DQ6B0I6 523 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 GTF2IRD2BQ6EKJ0 949 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 ZNF770Q6IQ21 691 aaPredicted RBP11.3□□□□□ -0.6
PNKP-217ENST00000625216 ZNF613Q6PF04 617 aa11.3□□□□□ -0.6
PNKP-217ENST00000625216 WDR88Q6ZMY6 472 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms