RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SLC47A1Q96FL8 570 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 POTEKPQ9BYX7 375 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 BCO1Q9HAY6 547 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 TIGARQ9NQ88 270 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 PAQR5Q9NXK6 330 aaPredicted RBP11.96□□□□□ -0.5
LINC00540-202ENST00000616974 CRIM1Q9NZV1 1036 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 TRAPPC4Q9Y296 219 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 FLVCR1Q9Y5Y0 555 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 ACANP16112 2415 aa11.96□□□□□ -0.5
LINC00540-202ENST00000616974 IL18BPO95998 194 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 SEMG1P04279 462 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 CTBP2P56545 445 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 PPP1R8Q12972 351 aaKnown RBP11.95□□□□□ -0.5
LINC00540-202ENST00000616974 PAQR6Q6TCH4 344 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 SLC46A3Q7Z3Q1 461 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 MCEMP1Q8IX19 187 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 STK35Q8TDR2 534 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 ZFP3Q96NJ6 502 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 NDUFAF4Q9P032 175 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 TCRBV5S2A0A599 114 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 AQP7P3A6NL99 342 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 SERPINI2O75830 405 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 AHSA1O95433 338 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 CH25HO95992 272 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 GPIP06744 558 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 SLC35A1P78382 337 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 BNIP1Q12981 228 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 IFI44LQ53G44 452 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 C9orf135Q5VTT2 229 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 RASSF5Q8WWW0 418 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 MARVELD3Q96A59 401 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 CADM1Q9BY67 442 aaKnown RBP11.95□□□□□ -0.5
LINC00540-202ENST00000616974 GORASP2Q9H8Y8 452 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 PLSCR4Q9NRQ2 329 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 PROCRQ9UNN8 238 aa11.95□□□□□ -0.5
LINC00540-202ENST00000616974 ENO4A6NNW6 628 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 MS4A18H0YCH9 400 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 SIAH2O43255 324 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 IFNW1P05000 195 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 CLK1P49759 484 aaKnown RBP11.94□□□□□ -0.5
LINC00540-202ENST00000616974 SELENOPP49908 381 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 DBPQ10586 325 aaPredicted RBP11.94□□□□□ -0.5
LINC00540-202ENST00000616974 MS4A18Q3C1V0 323 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 FBXL19-AS1Q494R0 122 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 FAM69AQ5T7M9 428 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 EPHX4Q8IUS5 362 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 DMRTC2Q8IXT2 367 aaPredicted RBP11.94□□□□□ -0.5
LINC00540-202ENST00000616974 OR9K2Q8NGE7 335 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 OR6K3Q8NGY3 331 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 OR52J3Q8NH60 311 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 MFSD8Q8NHS3 518 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 RNASE6Q93091 150 aaKnown RBP11.94□□□□□ -0.5
LINC00540-202ENST00000616974 TXNDC15Q96J42 360 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 SEPHS2Q99611 448 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 KLHL9Q9P2J3 617 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 AP3M1Q9Y2T2 418 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 EMC9Q9Y3B6 208 aa11.94□□□□□ -0.5
LINC00540-202ENST00000616974 TRAV36DV7A0A075B6V5 113 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 IGKV3D-15A0A087WSY6 115 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 A0A1W2PPR1 153 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 IFNA14P01570 189 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 CD8BP10966 210 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 RNPS1Q15287 305 aaKnown RBP11.93□□□□□ -0.5
LINC00540-202ENST00000616974 SEC23BQ15437 767 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 TMEM201Q5SNT2 666 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 STAC2Q6ZMT1 411 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 LINGO2Q7L985 606 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 GEMIN6Q8WXD5 167 aaKnown RBP11.93□□□□□ -0.5
LINC00540-202ENST00000616974 NRGNQ92686 78 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 PRRC1Q96M27 445 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 EMC6Q9BV81 110 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 C12orf10Q9HB07 376 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 MED29Q9NX70 200 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 HIVEP1P15822 2718 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 FLNAP21333 2647 aaKnown RBP11.93□□□□□ -0.5
LINC00540-202ENST00000616974 TRBV4-1A0A0J9YWV2 114 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 C11orf98E9PRG8 122 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 ACOT8O14734 319 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 MSTNO14793 375 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 LYZL6O75951 148 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 CRHP06850 196 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 MNAT1P51948 309 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 ZNF74Q16587 644 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 CXorf67Q86X51 503 aaPredicted RBP11.93□□□□□ -0.5
LINC00540-202ENST00000616974 GABRG1Q8N1C3 465 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 SLC43A2Q8N370 569 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 C10orf53Q8N6V4 93 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 SLC7A13Q8TCU3 470 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 ZNF837Q96EG3 531 aaPredicted RBP11.93□□□□□ -0.5
LINC00540-202ENST00000616974 ZC3HAV1LQ96H79 300 aaKnown RBP11.93□□□□□ -0.5
LINC00540-202ENST00000616974 NSMCE2Q96MF7 247 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 WFIKKN1Q96NZ8 548 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 TAPBPLQ9BX59 468 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 KLHL4Q9C0H6 718 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 C1orf21Q9H246 121 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 MAGEL2Q9UJ55 1249 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 SVEP1Q4LDE5 3571 aa11.93□□□□□ -0.5
LINC00540-202ENST00000616974 A0A087WUU8 490 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 A0A1W2PR80 420 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 OR5F1O95221 314 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms