RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PTGER3P43115 390 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 NDUFA6P56556 154 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 SOX8P57073 446 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 ABRAXAS2Q15018 415 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 C9orf64Q5T6V5 341 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 IL34Q6ZMJ4 242 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 TCEANCQ8N8B7 351 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 ZNF321PQ8N8H1 164 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 C19orf47Q8N9M1 422 aaKnown RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 KREMEN2Q8NCW0 462 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 SDR9C7Q8NEX9 313 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 OR56B1Q8NGI3 324 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 DDA1Q9BW61 102 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 OR52A5Q9H2C5 316 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 POPDC3Q9HBV1 291 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 PRM3Q9NNZ6 103 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 ZSCAN32Q9NX65 697 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CXXC1Q9P0U4 656 aaPredicted RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 CHD9Q3L8U1 2897 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 ZNF726A6NNF4 738 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CLIC1O00299 241 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 RFXANKO14593 260 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CHST10O43529 356 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 TRBC1P01850 177 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 GUSBP08236 651 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CD79AP11912 226 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 AHRP35869 848 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 AKR1C3P42330 323 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 DGKEP52429 567 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 STXBP1P61764 594 aaKnown RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 SHC2P98077 582 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 NFATC2Q13469 925 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 TRA2AQ13595 282 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS39-214ENST00000614932 INSL4Q14641 139 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 KCNMB1Q16558 191 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 NDUFA9Q16795 377 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CRB2Q5IJ48 1285 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 DCAF10Q5QP82 559 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 LANCL3Q6ZV70 420 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 CAMKMTQ7Z624 323 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 PEG10Q86TG7 708 aaKnown RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 GTPBP8Q8N3Z3 284 aaPredicted RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 PAQR8Q8TEZ7 354 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 TFGQ92734 400 aaPredicted RBP9.43□□□□□ -0.9
VPS39-214ENST00000614932 SNHG12Q9BXW3 62 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 ELOVL2Q9NXB9 296 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 ASF1AQ9Y294 204 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 NPFFR2Q9Y5X5 522 aa9.43□□□□□ -0.9
VPS39-214ENST00000614932 DSPPQ9NZW4 1301 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 CCDC187A0A096LP49 1063 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 DUXAA6NLW8 204 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 OR2AT4A6NND4 320 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 E7EQ34 232 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 GOSR2O14653 212 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 RGS14O43566 566 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 NARSO43776 548 aaKnown RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 KLK8O60259 260 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 GASTP01350 101 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 METTL15P1P0C7V9 234 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 THEGLP0DJG4 465 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 HMGCS1Q01581 520 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 PJVKQ0ZLH3 352 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 TEAD2Q15562 447 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 C2orf68Q2NKX9 166 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 MESTQ5EB52 335 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 RIPPLY2Q5TAB7 128 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 C12orf73Q69YU5 71 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 CDC73Q6P1J9 531 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 FIGNL1Q6PIW4 674 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 GOLGA7Q7Z5G4 137 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 THOC6Q86W42 341 aaKnown RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 SLC35F3Q8IY50 421 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 OR10A7Q8NGE5 316 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 ASB13Q8WXK3 278 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 NECAB3Q96P71 396 aaPredicted RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 DPH2Q9BQC3 489 aaPredicted RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 UTP23Q9BRU9 249 aaKnown RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 P2RY12Q9H244 342 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 UBQLN3Q9H347 655 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 IPPKQ9H8X2 491 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 TPT1P8Q9HAU6 139 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 ASB6Q9NWX5 421 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 FBXL4Q9UKA2 621 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 RCE1Q9Y256 329 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 CCL27Q9Y4X3 112 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 SPTBN5Q9NRC6 3674 aaKnown RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 M0QZK8 103 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 OR7A17O14581 309 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 FFAR2O15552 330 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 HCRTR2O43614 444 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 SFTA3P0C7M3 94 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 ZNF7P17097 686 aaPredicted RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 GPX2P18283 190 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 PPP2R1BP30154 601 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 TDGF1P3P51864 188 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 CRYBA2P53672 197 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 NRG3P56975 720 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 SLC25A24Q6NUK1 477 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 SBSNQ6UWP8 590 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 FOXRED2Q8IWF2 684 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms