RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 LTBQ06643 244 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 SLC17A1Q14916 467 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 IQCCQ4KMZ1 466 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 MTX3Q5HYI7 312 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF474Q6S9Z5 364 aaPredicted RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF610Q8N9Z0 462 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 ACBD4Q8NC06 268 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 TMEM255BQ8WV15 326 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 RNASE6Q93091 150 aaKnown RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 MOGAT1Q96PD6 335 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 FNDC11Q9BVV2 318 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 RBM24Q9BX46 236 aaKnown RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 C12orf49Q9H741 205 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 MEPEQ9NQ76 525 aaPredicted RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 MAN2C1Q9NTJ4 1040 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 EMC3Q9P0I2 261 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 SEC14L4Q9UDX3 406 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 FOXD3Q9UJU5 478 aaPredicted RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 FLNBO75369 2602 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 TCRBV5S2A0A599 114 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 ANKRD65E5RJM6 399 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 LRRN3E7EW58 273 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 hCG_2039718K7EN88 272 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 M0R082 166 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 KPNA4O00629 521 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 ACOT8O14734 319 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 GSC2O15499 205 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 IGFBP2P18065 325 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 CBLP22681 906 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 GTF2E2P29084 291 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 GRPRP30550 384 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 FOXD4Q12950 439 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 MFSD13AQ14CX5 517 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 HIST2H2BCQ6DN03 193 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 TMEM225Q6GV28 225 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF417Q8TAU3 575 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 TMEM239Q8WW34 195 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 LRRC46Q96FV0 321 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 HS6ST2Q96MM7 605 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF587Q96SQ5 575 aaPredicted RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 SF3B5Q9BWJ5 86 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 CADM1Q9BY67 442 aaKnown RBP14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 ENKD1Q9H0I2 346 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 GALNT8Q9NY28 637 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 B3GALT5Q9Y2C3 310 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 CORINQ9Y5Q5 1042 aa14.7□□□□□ -0.06
CCDC28A-202ENST00000611852 FREM1Q5H8C1 2179 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 GPR171O14626 319 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 VAMP5O95183 116 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 MT-ATP6P00846 226 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 MT-ND1P03886 318 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 RHCEP18577 417 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 UQCRC1P31930 480 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 NTF4P34130 210 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 UGT2B15P54855 530 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 TRAP1Q12931 704 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF74Q16587 644 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 H1FNTQ75WM6 255 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 GALNT5Q7Z7M9 940 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 GPAT4Q86UL3 456 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 CYP4Z1Q86W10 505 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 C10orf53Q8N6V4 93 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 C6orf203Q9P0P8 240 aaPredicted RBP14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 RASD1Q9Y272 281 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 FAM32AQ9Y421 112 aaKnown RBP14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 FLVCR1Q9Y5Y0 555 aa14.69□□□□□ -0.06
CCDC28A-202ENST00000611852 EDNRAP25101 427 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 TRAM2Q15035 370 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 TFAP2EQ6VUC0 442 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 SCAIQ8N9R8 606 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 ADPRHL1Q8NDY3 354 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 PIK3C3Q8NEB9 887 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 OR9K2Q8NGE7 335 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 PFN4Q8NHR9 129 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 ASPNQ9BXN1 380 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 KLHL4Q9C0H6 718 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 NMNAT1Q9HAN9 279 aaPredicted RBP14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 IL1RAPQ9NPH3 570 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 MRPL39Q9NYK5 338 aaKnown RBP14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 NOSIPQ9Y314 301 aaKnown RBP14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 PKDREJQ9NTG1 2253 aa14.68□□□□□ -0.06
CCDC28A-202ENST00000611852 ENO4A6NNW6 628 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 DIRAS1O95057 198 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 CH25HO95992 272 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 IGF2P01344 180 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 ITGA2P17301 1181 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 OR3A2P47893 321 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 LSM11P83369 360 aaKnown RBP eCLIP14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 POU4F3Q15319 338 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 STK32CQ86UX6 486 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 KDM8Q8N371 416 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 ZIC4Q8N9L1 334 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 MCUR1Q96AQ8 359 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 SEPHS2Q99611 448 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 PIP5K1AQ99755 562 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 SPOCK3Q9BQ16 436 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 LRMDAQ9H2I8 198 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 ANKRD19PQ9H560 264 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 FKRPQ9H9S5 495 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 C20orf141Q9NUB4 165 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms