RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 OAFQ86UD1 273 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 CBR4Q8N4T8 237 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ADPRHL1Q8NDY3 354 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNF417Q8TAU3 575 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 GTPBP3Q969Y2 492 aaKnown RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNF845Q96IR2 970 aaPredicted RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNF587Q96SQ5 575 aaPredicted RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 TUBA1CQ9BQE3 449 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 NAA11Q9BSU3 229 aaPredicted RBP12.85□□□□□ -0.35
UPF1-211ENST00000600868 UCK2Q9BZX2 261 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNF556Q9HAH1 456 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 CHST11Q9NPF2 352 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 PNPLA3Q9NST1 481 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 USE1Q9NZ43 259 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 KIF17Q9P2E2 1029 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 SIGLEC7Q9Y286 467 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 ZNF175Q9Y473 711 aa12.85□□□□□ -0.35
UPF1-211ENST00000600868 SVILO95425 2214 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 AQP7P3A6NL99 342 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 FIGNL2A6NMB9 653 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 CLCA1A8K7I4 914 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PLPP3O14495 311 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 SOCS2O14508 198 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 EI24O14681 340 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 WDR1O75083 606 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PTP4A3O75365 173 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 AKR7A3O95154 331 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 SYNGR4O95473 234 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 HPRP00739 348 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 ALPLP05186 524 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 HOXD4P09016 255 aaPredicted RBP12.84□□□□□ -0.35
UPF1-211ENST00000600868 GABRA1P14867 456 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 ENPP1P22413 925 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PEX2P28328 305 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 P2RY4P51582 365 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 ALDH3A2P51648 485 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 RPS4XP62701 263 aaKnown RBP12.84□□□□□ -0.35
UPF1-211ENST00000600868 GTF3C1Q12789 2109 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PMS2P3Q13401 168 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 FHL1Q13642 323 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 DAG1Q14118 895 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 ZBED5Q49AG3 693 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 ANKRD34AQ69YU3 496 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PPP4R4Q6NUP7 873 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 RASSF6Q6ZTQ3 369 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 NANOGNBQ7Z5D8 188 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PACRGLQ8N7B6 248 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 OR5M9Q8NGP3 310 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 OR13C2Q8NGS9 318 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 TNFRSF13CQ96RJ3 184 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 SLC29A1Q99808 456 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 RASSF4Q9H2L5 321 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 SMURF2Q9HAU4 748 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 FANCFQ9NPI8 374 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 PAPOLBQ9NRJ5 636 aaKnown RBP12.84□□□□□ -0.35
UPF1-211ENST00000600868 MCTS1Q9ULC4 181 aaKnown RBP12.84□□□□□ -0.35
UPF1-211ENST00000600868 POFUT2Q9Y2G5 429 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 HIF3AQ9Y2N7 669 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 COL6A6A6NMZ7 2263 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 SHANK1Q9Y566 2161 aa12.84□□□□□ -0.35
UPF1-211ENST00000600868 LOC102725191A0A1B0GVB3 256 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 PRRG2O14669 202 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 SMAD9O15198 467 aaKnown RBP12.83□□□□□ -0.36
UPF1-211ENST00000600868 SLC19A2O60779 497 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 RCBTB2O95199 551 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 TPOP07202 933 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 UQCRC1P31930 480 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 ZP4Q12836 540 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 PON3Q15166 354 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 TAF11Q15544 211 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 FBXW10Q5XX13 1052 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 LPCAT4Q643R3 524 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 RPL13AP3Q6NVV1 102 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 ZNF585AQ6P3V2 769 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 KLHL17Q6TDP4 642 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 ZNF620Q6ZNG0 422 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 FCRLAQ7L513 359 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 CD163Q86VB7 1156 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 SLC43A2Q8N370 569 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 PARP8Q8N3A8 854 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 CLDN22Q8N7P3 220 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 TMEM99Q8N816 258 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 OR51A7Q8NH64 312 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 NRG4Q8WWG1 115 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 CALHM2Q9HA72 323 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 MCCC2Q9HCC0 563 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 KRT84Q9NSB2 600 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 TAS2R5Q9NYW4 299 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 IL20Q9NYY1 176 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 CLCF1Q9UBD9 225 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 SEC14L4Q9UDX3 406 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 TMEFF2Q9UIK5 374 aaPredicted RBP12.83□□□□□ -0.36
UPF1-211ENST00000600868 RASD1Q9Y272 281 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 SPENQ96T58 3664 aaKnown RBP12.83□□□□□ -0.36
UPF1-211ENST00000600868 KIAA1549Q9HCM3 1950 aa12.83□□□□□ -0.36
UPF1-211ENST00000600868 TRAV27A0A087WT01 109 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 A0A1W2PNV4 684 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 CD8B2A6NJW9 211 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 SLC22A20A6NK97 555 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ZNF814B7Z6K7 855 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms