RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SLC35A1P78382 337 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 FOXD4Q12950 439 aaPredicted RBP9.4□□□□□ -0.9
LIG1-210ENST00000596332 KPNB1Q14974 876 aaKnown RBP9.4□□□□□ -0.9
LIG1-210ENST00000596332 TRAM2Q15035 370 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 PDSS1Q5T2R2 415 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 TTC33Q6PID6 262 aaPredicted RBP9.4□□□□□ -0.9
LIG1-210ENST00000596332 C5orf46Q6UWT4 87 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 MBOAT2Q6ZWT7 520 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 ZER1Q7Z7L7 766 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 EPHX4Q8IUS5 362 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 TUSC5Q8IXB3 177 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 NRMQ8IXM6 262 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 LRRC75AQ8NAA5 344 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 ACBD4Q8NC06 268 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 OR52J3Q8NH60 311 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 LILRB4Q8NHJ6 448 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 ZNF417Q8TAU3 575 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 RND1Q92730 232 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 ZNF775Q96BV0 537 aaPredicted RBP9.4□□□□□ -0.9
LIG1-210ENST00000596332 SLC25A36Q96CQ1 311 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 HS6ST2Q96MM7 605 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 ZNF587Q96SQ5 575 aaPredicted RBP9.4□□□□□ -0.9
LIG1-210ENST00000596332 TM9SF2Q99805 663 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 FNDC11Q9BVV2 318 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 UCK2Q9BZX2 261 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 PLSCR4Q9NRQ2 329 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 ARMC1Q9NVT9 282 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 KLHL13Q9P2N7 655 aa9.4□□□□□ -0.9
LIG1-210ENST00000596332 MPDZO75970 2070 aa9.4□□□□□ -0.91
LIG1-210ENST00000596332 PCNX1Q96RV3 2341 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 USP9YO00507 2555 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 ENO4A6NNW6 628 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 ZNF724A8MTY0 619 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 KPNA4O00629 521 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 OR2T1O43869 369 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 OR7A10O76100 309 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 AHSA1O95433 338 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 CLDN1O95832 211 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 CH25HO95992 272 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 IL18BPO95998 194 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 TP53P04637 393 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 CRHP06850 196 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 TMIGD3P0DMS9 266 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 ITGA2P17301 1181 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 AGAP20933 346 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 AGTR1P30556 359 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 UQCRC1P31930 480 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 CASP6P55212 293 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 RPS4XP62701 263 aaKnown RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 CHRNB3Q05901 458 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 ZP4Q12836 540 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 SF3B4Q15427 424 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIG1-210ENST00000596332 EXOC3L2Q2M3D2 409 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 ANKRD34AQ69YU3 496 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 OR2T5Q6IEZ7 315 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 HMBOX1Q6NT76 420 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 ZNF474Q6S9Z5 364 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 TMPRSS11FQ6ZWK6 438 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 FAM214BQ7L5A3 538 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 MRGPRGQ86SM5 289 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 SPATA24Q86W54 205 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 RNF113BQ8IZP6 322 aaKnown RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 FAM26EQ8N5C1 309 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 ADPRHL1Q8NDY3 354 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 OR2T29Q8NH02 315 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 GMPPAQ96IJ6 420 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 ZNF385AQ96PM9 386 aaKnown RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 PSMG3-AS1Q96PY0 264 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 ZNF347Q96SE7 839 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 TIGARQ9NQ88 270 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 MRPL39Q9NYK5 338 aaKnown RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 ZNF629Q9UEG4 869 aaPredicted RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 MCTS1Q9ULC4 181 aaKnown RBP9.39□□□□□ -0.91
LIG1-210ENST00000596332 FLVCR1Q9Y5Y0 555 aa9.39□□□□□ -0.91
LIG1-210ENST00000596332 HSPB2A8KAH6 182 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 A8MXE2 369 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 C19orf84I3L1E1 186 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 TRAF3IP2O43734 574 aaPredicted RBP9.38□□□□□ -0.91
LIG1-210ENST00000596332 EIF1BO60739 113 aaKnown RBP9.38□□□□□ -0.91
LIG1-210ENST00000596332 ZNF432O94892 652 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 GADD45GO95257 159 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 SYNGR4O95473 234 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 MT-ATP6P00846 226 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 IL2RAP01589 272 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 YES1P07947 543 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 OPRM1P35372 400 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 GSSP48637 474 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 RASGEF1BQ0VAM2 473 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 LAPTM4AQ15012 233 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 POU4F3Q15319 338 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 HSPB2Q16082 182 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 FAM98BQ52LJ0 330 aaKnown RBP9.38□□□□□ -0.91
LIG1-210ENST00000596332 OTUD3Q5T2D3 398 aaPredicted RBP9.38□□□□□ -0.91
LIG1-210ENST00000596332 C1orf146Q5VVC0 180 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 C22orf34Q6ZV56 151 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 CREB3L2Q70SY1 520 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 H1FNTQ75WM6 255 aaPredicted RBP9.38□□□□□ -0.91
LIG1-210ENST00000596332 CHMP1BQ7LBR1 199 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 HS3ST5Q8IZT8 346 aa9.38□□□□□ -0.91
LIG1-210ENST00000596332 SLC43A2Q8N370 569 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms