RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 CEP85LQ5SZL2 805 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 HHATQ5VTY9 493 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 C1orf140Q5VVS0 124 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 SLC38A5Q8WUX1 472 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 ZNF317Q96PQ6 595 aaPredicted RBP20.85■□□□□ 0.93
LSM4-202ENST00000593564 KATNB1Q9BVA0 655 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 THAP1Q9NVV9 213 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 RASD1Q9Y272 281 aa20.85■□□□□ 0.93
LSM4-202ENST00000593564 VWC2LB2RUY7 222 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 NDUFS8O00217 210 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 SLC22A3O75751 556 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 LGI1O95970 557 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 BCHEP06276 602 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 PRG2P13727 222 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 IDO1P14902 403 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 CRATP43155 626 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 GZMKP49863 264 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 LGALS3BPQ08380 585 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 PRAMEF8Q5VWM4 474 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 PRAMEF7Q5VXH5 474 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 EPHX4Q8IUS5 362 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 CLIP4Q8N3C7 705 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 STK35Q8TDR2 534 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 C3orf49Q96BT1 292 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 SORCS2Q96PQ0 1159 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 ALKBH3Q96Q83 286 aaPredicted RBP20.84■□□□□ 0.93
LSM4-202ENST00000593564 KCNS3Q9BQ31 491 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 TPT1P8Q9HAU6 139 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 CA10Q9NS85 328 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 THUMPD1Q9NXG2 353 aaKnown RBP20.84■□□□□ 0.93
LSM4-202ENST00000593564 CRNNQ9UBG3 495 aaPredicted RBP20.84■□□□□ 0.93
LSM4-202ENST00000593564 CHST2Q9Y4C5 530 aa20.84■□□□□ 0.93
LSM4-202ENST00000593564 SVEP1Q4LDE5 3571 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 ARPC4-TTLL3A0A0A6YYG9 625 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 TMEM229AB2RXF0 380 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 SNNO75324 88 aaPredicted RBP20.83■□□□□ 0.93
LSM4-202ENST00000593564 NCF2P19878 526 aaPredicted RBP20.83■□□□□ 0.93
LSM4-202ENST00000593564 SERPINF1P36955 418 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 UBE2NP61088 152 aaKnown RBP20.83■□□□□ 0.93
LSM4-202ENST00000593564 C3orf36Q3SXR2 165 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 ANKRD42Q8N9B4 389 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 MAGEE2Q8TD90 523 aaPredicted RBP20.83■□□□□ 0.93
LSM4-202ENST00000593564 BCL2L2Q92843 193 aaPredicted RBP20.83■□□□□ 0.93
LSM4-202ENST00000593564 PIMREGQ9BSJ6 248 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 SPATA9Q9BWV2 254 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 PARD6BQ9BYG5 372 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 LINC00470Q9BZP3 86 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 SHARPINQ9H0F6 387 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 ARMC7Q9H6L4 198 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 ZNF232Q9UNY5 417 aa20.83■□□□□ 0.93
LSM4-202ENST00000593564 SLCO1B7G3V0H7 640 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 LMX1BO60663 402 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 PDE5AO76074 875 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 ANP32DO95626 131 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 CRYAAP02489 173 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 THBS2P35442 1172 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 NR4A2P43354 598 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 WDR4P57081 412 aaKnown RBP20.82■□□□□ 0.92
LSM4-202ENST00000593564 RPS26P11Q5JNZ5 115 aaPredicted RBP20.82■□□□□ 0.92
LSM4-202ENST00000593564 NIPAL3Q6P499 406 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 MSANTD1Q6ZTZ1 278 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 LINGO2Q7L985 606 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 SERPINA11Q86U17 422 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 MFSD8Q8NHS3 518 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 TMEM19Q96HH6 336 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 MAELQ96JY0 434 aaKnown RBP20.82■□□□□ 0.92
LSM4-202ENST00000593564 RMND5AQ9H871 391 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 CACYBPQ9HB71 228 aaKnown RBP20.82■□□□□ 0.92
LSM4-202ENST00000593564 MOV10Q9HCE1 1003 aaKnown RBP20.82■□□□□ 0.92
LSM4-202ENST00000593564 MYOZ1Q9NP98 299 aaPredicted RBP20.82■□□□□ 0.92
LSM4-202ENST00000593564 ZIM2Q9NZV7 527 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 IFT52Q9Y366 437 aa20.82■□□□□ 0.92
LSM4-202ENST00000593564 A0A0G2JPF8 293 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 HNRNPCL2B2RXH8 293 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 HNRNPCL3B7ZW38 293 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 B9A039 149 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 FTCDNL1E5RQL4 147 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 HNRNPCL1O60812 293 aaKnown RBP20.81■□□□□ 0.92
LSM4-202ENST00000593564 UPK3AO75631 287 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 AHSA1O95433 338 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 HNRNPCL4P0DMR1 293 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 GGTLC2Q14390 218 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 EFNB3Q15768 340 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 GTDC1Q4AE62 458 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 NXNQ6DKJ4 435 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 CROCCP2Q86T23 111 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 FAM169BQ8N8A8 192 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 ITCHQ96J02 903 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 NELFAQ9H3P2 528 aa20.81■□□□□ 0.92
LSM4-202ENST00000593564 SDR39U1Q9NRG7 319 aaPredicted RBP20.81■□□□□ 0.92
LSM4-202ENST00000593564 MALRD1Q5VYJ5 2156 aa20.8■□□□□ 0.92
LSM4-202ENST00000593564 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.8■□□□□ 0.924e-11■■■■■ 41.7
LSM4-202ENST00000593564 LOC390937A0A1W2PQ73 354 aa20.8■□□□□ 0.92
LSM4-202ENST00000593564 TMEM247A6NEH6 219 aa20.8■□□□□ 0.92
LSM4-202ENST00000593564 IGLV1-44P01699 117 aa20.8■□□□□ 0.92
LSM4-202ENST00000593564 CECR9P0C854 216 aa20.8■□□□□ 0.92
LSM4-202ENST00000593564 KITP10721 976 aa20.8■□□□□ 0.92
LSM4-202ENST00000593564 HOXB1P14653 301 aaPredicted RBP20.8■□□□□ 0.92
LSM4-202ENST00000593564 SH3BGRP55822 239 aaPredicted RBP20.8■□□□□ 0.92
LSM4-202ENST00000593564 NAAAQ02083 359 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms