RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 LPAR4Q99677 370 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 TEX12Q9BXU0 123 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 GABARAPL3Q9BY60 117 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 TRIM2Q9C040 744 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 IMPAD1Q9NX62 359 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 SCN3BQ9NY72 215 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 RPS6KB2Q9UBS0 482 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 A4GNTQ9UNA3 340 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 PCDHGB6Q9Y5F9 930 aa9.28□□□□□ -0.92
SS18-221ENST00000582448 TRAV20A0A0B4J274 112 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 SH3PXD2BA1X283 911 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 TRAPPC13A5PLN9 417 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CDHR4A6H8M9 788 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 H3BN98 237 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 PRRG2O14669 202 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 MPZL2O60487 215 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 TPST2O60704 377 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CLIC3O95833 236 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 IGKV3-11P04433 115 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 POU2F1P14859 743 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CBLP22681 906 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CLK3P49761 638 aaKnown RBP9.27□□□□□ -0.93
SS18-221ENST00000582448 CDC42P60953 191 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CSNK2BP67870 215 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 TUBA4AP68366 448 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 RPP38P78345 283 aaKnown RBP9.27□□□□□ -0.93
SS18-221ENST00000582448 HSF1Q00613 529 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 OC90Q02509 493 aaPredicted RBP9.27□□□□□ -0.93
SS18-221ENST00000582448 ZNF141Q15928 474 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 NNATQ16517 81 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 KRTCAP3Q53RY4 240 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 PDZK1Q5T2W1 519 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 ZNF691Q5VV52 312 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 SPINK14Q6IE38 97 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 PODNL1Q6PEZ8 512 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 HSDL2Q6YN16 418 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 ANKRD37Q7Z713 158 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 LACC1Q8IV20 430 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CDK20Q8IZL9 346 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 BEST3Q8N1M1 668 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 CLIP4Q8N3C7 705 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 OR4K5Q8NGD3 323 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 OR9Q2Q8NGE9 314 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 OR4D11Q8NGI4 311 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 ZNF721Q8TF20 911 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 HDAC2Q92769 488 aaKnown RBP9.27□□□□□ -0.93
SS18-221ENST00000582448 HSPBAP1Q96EW2 488 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 SLC41A3Q96GZ6 507 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 SIGLEC12Q96PQ1 595 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 DGCR6LQ9BY27 220 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 PRRG3Q9BZD7 231 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 ZNF700Q9H0M5 742 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 UBQLN4Q9NRR5 601 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 RLIMQ9NVW2 624 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 FBXO34Q9NWN3 711 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 TUBA8Q9NY65 449 aaPredicted RBP9.27□□□□□ -0.93
SS18-221ENST00000582448 NDUFA13Q9P0J0 144 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 SLC35A3Q9Y2D2 325 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 TPRKBQ9Y3C4 175 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 PCNX1Q96RV3 2341 aa9.27□□□□□ -0.93
SS18-221ENST00000582448 HIVEP1P15822 2718 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CCDC168Q8NDH2 2452 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 SCN3AQ9NY46 2000 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CELSR1Q9NYQ6 3014 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 SERINC4A6NH21 518 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 GTPBP1O00178 669 aaKnown RBP9.26□□□□□ -0.93
SS18-221ENST00000582448 FRS3O43559 492 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 REM1O75628 298 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 IL33O95760 270 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 EPPINO95925 133 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CSTAP01040 98 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 GASTP01350 101 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CT45A8P0DMV1 189 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CT45A9P0DMV2 189 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 OSMP13725 252 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CD99P14209 185 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 ATP6V1B1P15313 513 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 POU1F1P28069 291 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 GGT2P36268 569 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 RPL5P46777 297 aaKnown RBP9.26□□□□□ -0.93
SS18-221ENST00000582448 NR1H2P55055 460 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 PLCXD2Q0VAA5 305 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 TUBA3CQ13748 450 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 FGFBP1Q14512 234 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 OR1C1Q15619 314 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 NPTX1Q15818 432 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 MAPK14Q16539 360 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 CT45A2Q5DJT8 189 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 ACER2Q5QJU3 275 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 TUBA3EQ6PEY2 450 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 ZNF613Q6PF04 617 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 NPSR1Q6W5P4 371 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 LANCL3Q6ZV70 420 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 GALNTL5Q7Z4T8 443 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.26□□□□□ -0.93
SS18-221ENST00000582448 TMEM200AQ86VY9 491 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 GRAMD2AQ8IUY3 354 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 P3H2Q8IVL5 708 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 C17orf47Q8NEP4 570 aa9.26□□□□□ -0.93
SS18-221ENST00000582448 B3GNT7Q8NFL0 401 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms