RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 MYOZ1Q9NP98 299 aaPredicted RBP9.23□□□□□ -0.93
RFFL-209ENST00000581265 CA10Q9NS85 328 aa9.23□□□□□ -0.93
RFFL-209ENST00000581265 ADPRHL2Q9NX46 363 aa9.23□□□□□ -0.93
RFFL-209ENST00000581265 CALML5Q9NZT1 146 aa9.23□□□□□ -0.93
RFFL-209ENST00000581265 CRNNQ9UBG3 495 aaPredicted RBP9.23□□□□□ -0.93
RFFL-209ENST00000581265 FKBP7Q9Y680 259 aa9.23□□□□□ -0.93
RFFL-209ENST00000581265 DSPPQ9NZW4 1301 aa9.23□□□□□ -0.93
RFFL-209ENST00000581265 ARPC4-TTLL3A0A0A6YYG9 625 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 LOC100289279A0A1B0GTE1 492 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZNF587BE7ETH6 402 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 SDHDO14521 159 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 RFXANKO14593 260 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 KRT33AO76009 404 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 PDE5AO76074 875 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 LGI1O95970 557 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 IGLV1-44P01699 117 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 IL6P05231 212 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 OR4A8P0C604 315 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZCCHC18P0CG32 403 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZNF16P17020 682 aaPredicted RBP9.22□□□□□ -0.93
RFFL-209ENST00000581265 IGFBP5P24593 272 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 SELENOPP49908 381 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 UBE2NP61088 152 aaKnown RBP9.22□□□□□ -0.93
RFFL-209ENST00000581265 SNRPD2P62316 118 aaKnown RBP9.22□□□□□ -0.93
RFFL-209ENST00000581265 NAAAQ02083 359 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 BST1Q10588 318 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 BNIP2Q12982 314 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 GGTLC2Q14390 218 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 EFNB3Q15768 340 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ADIPOQQ15848 244 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 LIN52Q52LA3 116 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 FAM120AOSQ5T036 256 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 RNF220Q5VTB9 566 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 C1orf140Q5VVS0 124 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 FAM166AQ6J272 317 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZNF836Q6ZNA1 936 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 LINGO2Q7L985 606 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 VRK2Q86Y07 508 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 CLIP4Q8N3C7 705 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 CADM2Q8N3J6 435 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZNF540Q8NDQ6 660 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ANKK1Q8NFD2 765 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 MFSD8Q8NHS3 518 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 PNPT1Q8TCS8 783 aaKnown RBP9.22□□□□□ -0.93
RFFL-209ENST00000581265 STK35Q8TDR2 534 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 SLC38A5Q8WUX1 472 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZBTB18Q99592 522 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 VRK1Q99986 396 aaPredicted RBP9.22□□□□□ -0.93
RFFL-209ENST00000581265 KCNS3Q9BQ31 491 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 PIMREGQ9BSJ6 248 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 LINC00470Q9BZP3 86 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 PLK3Q9H4B4 646 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 SLC6A13Q9NSD5 602 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 P2RX2Q9UBL9 471 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 FBXO9Q9UK97 447 aaPredicted RBP9.22□□□□□ -0.93
RFFL-209ENST00000581265 KCNS2Q9ULS6 477 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 ZNF232Q9UNY5 417 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 RASD1Q9Y272 281 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 CHST2Q9Y4C5 530 aa9.22□□□□□ -0.93
RFFL-209ENST00000581265 IGHV4-61A0A0C4DH41 118 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 A0A0G2JPF8 293 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 SLC35F4A4IF30 521 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 TMEM229AB2RXF0 380 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 HNRNPCL2B2RXH8 293 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 HNRNPCL3B7ZW38 293 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 FTCDNL1E5RQL4 147 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 RPL36A-HNRNPH2H7BZ11 118 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 NR5A2O00482 541 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 HDAC3O15379 428 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 FRS3O43559 492 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 HNRNPCL1O60812 293 aaKnown RBP9.21□□□□□ -0.94
RFFL-209ENST00000581265 UPK3AO75631 287 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 IGKV3-15P01624 115 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 HNRNPCL4P0DMR1 293 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 PRG2P13727 222 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 ETFAP13804 333 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 SRD5A1P18405 259 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 EPHA3P29320 983 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 CRISP3P54108 245 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 SH3BGRP55822 239 aaPredicted RBP9.21□□□□□ -0.94
RFFL-209ENST00000581265 LGALS3BPQ08380 585 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 LARS2Q15031 903 aaKnown RBP9.21□□□□□ -0.94
RFFL-209ENST00000581265 PRAMEF8Q5VWM4 474 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 PRAMEF7Q5VXH5 474 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 SLC46A3Q7Z3Q1 461 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 OR4F15Q8NGB8 312 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 SLC35B4Q969S0 331 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 C3orf49Q96BT1 292 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 TRIM44Q96DX7 344 aaPredicted RBP9.21□□□□□ -0.94
RFFL-209ENST00000581265 SPATA9Q9BWV2 254 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 NELFAQ9H3P2 528 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 ARMC7Q9H6L4 198 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 WDR55Q9H6Y2 383 aaPredicted RBP9.21□□□□□ -0.94
RFFL-209ENST00000581265 TPT1P8Q9HAU6 139 aa9.21□□□□□ -0.94
RFFL-209ENST00000581265 THUMPD1Q9NXG2 353 aaKnown RBP9.21□□□□□ -0.94
RFFL-209ENST00000581265 SVEP1Q4LDE5 3571 aa9.2□□□□□ -0.94
RFFL-209ENST00000581265 TRPC5OSA6NMA1 111 aa9.2□□□□□ -0.94
RFFL-209ENST00000581265 VSTM5A8MXK1 200 aa9.2□□□□□ -0.94
RFFL-209ENST00000581265 FZD7O75084 574 aa9.2□□□□□ -0.94
RFFL-209ENST00000581265 SLC22A3O75751 556 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms