RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SLC6A5Q9Y345 797 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 ADAM18Q9Y3Q7 739 aa9.51□□□□□ -0.89
SS18-217ENST00000580958 A0A0G2JMM0 328 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 A0A1W2PPB8 328 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 A0A1W2PRS3 328 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 IRGMA1A4Y4 181 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 CCDC182A6NF36 153 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 KIR3DP1A8MWS1 328 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 PRR23D1E9PI22 279 aaPredicted RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 M0R082 166 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 EFNA2O43921 213 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 RAB36O95755 333 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 F10P00742 488 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 P04436 131 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 CD14P08571 375 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 PRR23D2P0DMB1 279 aaPredicted RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 LIPCP11150 499 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 PEPDP12955 493 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 HIST1H1CP16403 213 aaKnown RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 IL11P20809 199 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 ITGA3P26006 1051 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 DCKP27707 260 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 GRPRP30550 384 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 HTR1FP30939 366 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 MTNR1AP48039 350 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 SRSF6Q13247 344 aaKnown RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 ANKDD1AQ495B1 522 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 ALG10Q5BKT4 473 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 ZNF362Q5T0B9 420 aaPredicted RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 FAM69AQ5T7M9 428 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 SYT6Q5T7P8 510 aaPredicted RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 MEPCEQ7L2J0 689 aaKnown RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 SHFQ7M4L6 423 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 MDGA2Q7Z553 956 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 GID4Q8IVV7 300 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 GPALPP1Q8IXQ4 340 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 CYB561A3Q8NBI2 242 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 SDR9C7Q8NEX9 313 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 OR5J2Q8NH18 312 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 FCGR1BQ92637 280 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 ISOC1Q96CN7 298 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 RASD2Q96D21 266 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 CRELD1Q96HD1 420 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 Q96M85 177 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 JSRP1Q96MG2 331 aaPredicted RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 CDCA4Q9BXL8 241 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 NDEL1Q9GZM8 345 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 PTGES2Q9H7Z7 377 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 NRIP3Q9NQ35 241 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 MRPS18AQ9NVS2 196 aaKnown RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 SEC14L4Q9UDX3 406 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 CLEC2DQ9UHP7 191 aa9.5□□□□□ -0.89
SS18-217ENST00000580958 DIMT1Q9UNQ2 313 aaKnown RBP9.5□□□□□ -0.89
SS18-217ENST00000580958 A0A087WZY1 265 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TEX13CA0A0J9YWL9 993 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ANKRD33BA6NCL7 494 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 FTCDNL1E5RQL4 147 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 C11orf98E9PRG8 122 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ARPC3O15145 178 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ZNF208O43345 1280 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 IDH3BO43837 385 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 OR2T1O43869 369 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TRIM3O75382 744 aaPredicted RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 TRMUO75648 421 aaKnown RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 MT-ATP6P00846 226 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 F13BP05160 661 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TSPAN19P0C672 248 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TFPIP10646 304 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 IMPDH2P12268 514 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 SLC2A5P22732 501 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ACVR2AP27037 513 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 DPP4P27487 766 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 DNASE1L1P49184 302 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 OC90Q02509 493 aaPredicted RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 DBPQ10586 325 aaPredicted RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 RAB40BQ12829 278 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 AIMP2Q13155 320 aaKnown RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 SGCBQ16585 318 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TIGD6Q17RP2 521 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 KLHL12Q53G59 568 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ABHD17BQ5VST6 288 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 RNLSQ5VYX0 342 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 SLC6A19Q695T7 634 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TIGD3Q6B0B8 471 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ZNF787Q6DD87 383 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 PAQR6Q6TCH4 344 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 B3GLCTQ6Y288 498 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ZNF367Q7RTV3 350 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ZNF227Q86WZ6 799 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 GHDCQ8N2G8 530 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 LSM14AQ8ND56 463 aaKnown RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 OR4F15Q8NGB8 312 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 OR1J4Q8NGS1 313 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 OR6S1Q8NH40 331 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 ZNF417Q8TAU3 575 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 PTP4A1Q93096 173 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 C12orf43Q96C57 262 aaKnown RBP9.49□□□□□ -0.89
SS18-217ENST00000580958 DDIT4LQ96D03 193 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 YIPF6Q96EC8 236 aa9.49□□□□□ -0.89
SS18-217ENST00000580958 TMEM41AQ96HV5 264 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms