RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TPST2O60704 377 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 TMCC2O75069 709 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 IGHV3-9P01782 118 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 GTF2E2P29084 291 aaKnown RBP13.08□□□□□ -0.32
SS18-212ENST00000579061 RPS5P46782 204 aaKnown RBP13.08□□□□□ -0.32
SS18-212ENST00000579061 FAPQ12884 760 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 VEZF1Q14119 521 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 MFSD13AQ14CX5 517 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 ERICH5Q6P6B1 374 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 ZNF613Q6PF04 617 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 CREB3L2Q70SY1 520 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 AAED1Q7RTV5 226 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 SNX32Q86XE0 403 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 TGIF2LYQ8IUE0 185 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 LRRC75A-AS1Q8N1F1 130 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 SMYD1Q8NB12 490 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 C1orf162Q8NEQ5 155 aaPredicted RBP13.08□□□□□ -0.32
SS18-212ENST00000579061 GPR32P1Q8NGA4 272 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 MUS81Q96NY9 551 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 ZNF385AQ96PM9 386 aaKnown RBP13.08□□□□□ -0.32
SS18-212ENST00000579061 EPYCQ99645 322 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 AMBRA1Q9C0C7 1298 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 SLCO5A1Q9H2Y9 848 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 SLC7A10Q9NS82 523 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 B3GALT5Q9Y2C3 310 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 RNF115Q9Y4L5 304 aa13.08□□□□□ -0.32
SS18-212ENST00000579061 HEATR1Q9H583 2144 aaKnown RBP13.07□□□□□ -0.32
SS18-212ENST00000579061 IGKV1D-42A0A075B6H8 117 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 LOC100653049A0A140TA62 436 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 LOC102725191A0A1B0GVB3 256 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 OR6C65A6NJZ3 312 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 CCT8L1PA6NM43 557 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 HS3ST1O14792 307 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 AIM2O14862 343 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 KRT34O76011 436 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 CD3EP07766 207 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 ITGA5P08648 1049 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 CD247P20963 164 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 TGFBR3Q03167 851 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 SF3A3Q12874 501 aaKnown RBP eCLIP13.07□□□□□ -0.32
SS18-212ENST00000579061 STK11Q15831 433 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 RABL3Q5HYI8 236 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 TSPO2Q5TGU0 170 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 ABHD12BQ7Z5M8 362 aaPredicted RBP13.07□□□□□ -0.32
SS18-212ENST00000579061 GPAT4Q86UL3 456 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 LSRQ86X29 649 aaPredicted RBP13.07□□□□□ -0.32
SS18-212ENST00000579061 C17orf78Q8N4C9 275 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 ZNF611Q8N823 705 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 ADPRHL1Q8NDY3 354 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 RP9Q8TA86 221 aaKnown RBP13.07□□□□□ -0.32
SS18-212ENST00000579061 SLC26A7Q8TE54 656 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 TAAR8Q969N4 342 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 SLC25A36Q96CQ1 311 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 KTI12Q96EK9 354 aaPredicted RBP13.07□□□□□ -0.32
SS18-212ENST00000579061 BOD1Q96IK1 185 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 OXGR1Q96P68 337 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 MCHR1Q99705 422 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 WFDC6Q9BQY6 131 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 TMEM43Q9BTV4 400 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 TMUB1Q9BVT8 246 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 PRR14Q9BWN1 585 aa13.07□□□□□ -0.32
SS18-212ENST00000579061 M0R3H8 397 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 CCDC22O60826 627 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 RAD51DO75771 328 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 PLAUP00749 431 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 OPN1SWP03999 348 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 MPGP29372 298 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 HOXC12P31275 282 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 CDH12P55289 794 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 ADAM8P78325 824 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 GABRA6Q16445 453 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 SHEQ5VZ18 495 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 ALKBH2Q6NS38 261 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 LINC00114Q6XXX2 140 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 EPHX4Q8IUS5 362 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 IGFBPL1Q8WX77 278 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 TAMM41Q96BW9 452 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 ZNF583Q96ND8 569 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 CCL19Q99731 98 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 PCDHAC1Q9H158 963 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 AP3M1Q9Y2T2 418 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 CORINQ9Y5Q5 1042 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 SLC25A15Q9Y619 301 aa13.06□□□□□ -0.32
SS18-212ENST00000579061 PLCE1Q9P212 2302 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 DPRXA6NFQ7 191 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 ARHGEF9O43307 516 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 CHP2O43745 196 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 SMPD2O60906 423 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 ZNF43P17038 809 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 GRPRP30550 384 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 FOXG1P55316 489 aaPredicted RBP13.05□□□□□ -0.32
SS18-212ENST00000579061 BSPH1Q075Z2 132 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 NPTX1Q15818 432 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 ENTPD8Q5MY95 495 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 H1FNTQ75WM6 255 aaPredicted RBP13.05□□□□□ -0.32
SS18-212ENST00000579061 ARPINQ7Z6K5 226 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 SCAIQ8N9R8 606 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 OR6T1Q8NGN1 323 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 RNF217Q8TC41 542 aa13.05□□□□□ -0.32
SS18-212ENST00000579061 AKAP1Q92667 903 aaKnown RBP eCLIP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms