RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 MFSD13AQ14CX5 517 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 FBXW9Q5XUX1 488 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 ANKRD34AQ69YU3 496 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 CBLL1Q75N03 491 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.09■□□□□ 0.33
SS18-208ENST00000577751 TMEM200AQ86VY9 491 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 PGAM4Q8N0Y7 254 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 CCDC197Q8NCU1 140 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 APH1AQ96BI3 265 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 SLC41A3Q96GZ6 507 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 TPD52L3Q96J77 140 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 PARPBPQ9NWS1 579 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 SLC7A7Q9UM01 511 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 B3GALT5Q9Y2C3 310 aa17.09■□□□□ 0.33
SS18-208ENST00000577751 CASKO14936 926 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 GSTA4O15217 222 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 THBDP07204 575 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 GGT1P19440 569 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 CRYGSP22914 178 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 FXNQ16595 210 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 CREB3L2Q70SY1 520 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 GPAT4Q86UL3 456 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 ADPRHL1Q8NDY3 354 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 STEAP2Q8NFT2 490 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 LZICQ8WZA0 190 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 ZNF385AQ96PM9 386 aaKnown RBP17.08■□□□□ 0.32
SS18-208ENST00000577751 ACTR6Q9GZN1 396 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 CLEC4MQ9H2X3 399 aaPredicted RBP17.08■□□□□ 0.32
SS18-208ENST00000577751 ZNF226Q9NYT6 803 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 ADA2Q9NZK5 511 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 SEC14L4Q9UDX3 406 aa17.08■□□□□ 0.32
SS18-208ENST00000577751 PDZD2O15018 2839 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 CSMD1Q96PZ7 3565 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 LOC102725191A0A1B0GVB3 256 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 M0R082 166 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 HRGP04196 525 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 HSD17B1P14061 328 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 COX5AP20674 150 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 IGHV1-2P23083 117 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 GTF2E2P29084 291 aaKnown RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 GRPRP30550 384 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 SLC25A3Q00325 362 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 PIN1Q13526 163 aaPredicted RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 TSC22D1Q15714 1073 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 TTC33Q6PID6 262 aaPredicted RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 H1FNTQ75WM6 255 aaPredicted RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 VTCN1Q7Z7D3 282 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 EPHX4Q8IUS5 362 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 KDM8Q8N371 416 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 SCAIQ8N9R8 606 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 ZNF417Q8TAU3 575 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 KISS1RQ969F8 398 aaPredicted RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 MOGAT1Q96PD6 335 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 ZNF587Q96SQ5 575 aaPredicted RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 USB1Q9BQ65 265 aaKnown RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 POLDIP3Q9BY77 421 aaKnown RBP17.07■□□□□ 0.32
SS18-208ENST00000577751 SLC19A3Q9BZV2 496 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 B3GAT1Q9P2W7 334 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 MALT1Q9UDY8 824 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 CD300AQ9UGN4 299 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 EGFL7Q9UHF1 273 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 RIMS3Q9UJD0 308 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 CORINQ9Y5Q5 1042 aa17.07■□□□□ 0.32
SS18-208ENST00000577751 DEFB108AA8MXU0 73 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 MS4A18H0YCH9 400 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 PDLIM1O00151 329 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 SIAH2O43255 324 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 OR5F1O95221 314 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 SERPINA1P01009 418 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 IGHV3-9P01782 118 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 THRBP10828 461 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 NCK1P16333 377 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 PTNP21246 168 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 MNAT1P51948 309 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 MS4A18Q3C1V0 323 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 GLYATQ6IB77 296 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 CASP12Q6UXS9 341 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 DEF8Q6ZN54 512 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 RNF148Q8N7C7 305 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 S100PBPQ96BU1 408 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 OXGR1Q96P68 337 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 AMBRA1Q9C0C7 1298 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 NDE1Q9NXR1 346 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 MRPL39Q9NYK5 338 aaKnown RBP17.06■□□□□ 0.32
SS18-208ENST00000577751 A4GNTQ9UNA3 340 aa17.06■□□□□ 0.32
SS18-208ENST00000577751 TEX15Q9BXT5 2789 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 LRRN3E7EW58 273 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 MT-ATP6P00846 226 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 CBLP22681 906 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 IL32P24001 234 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 TAS2R41P59536 307 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 TSPO2Q5TGU0 170 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 C16orf89Q6UX73 402 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 NHLRC1Q6VVB1 395 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 BHLHA15Q7RTS1 189 aaPredicted RBP17.05■□□□□ 0.32
SS18-208ENST00000577751 AAED1Q7RTV5 226 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 CDC20BQ86Y33 519 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 NKAIN4Q8IVV8 208 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 UBE2J2Q8N2K1 259 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 ZNF433Q8N7K0 673 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms