RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CBFBQ13951 182 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 SNAPC1Q16533 368 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TMEM236Q5W0B7 351 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 C12orf73Q69YU5 71 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 KCTD8Q6ZWB6 473 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TMPRSS11FQ6ZWK6 438 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 MARCH3Q86UD3 253 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 SATL1Q86VE3 508 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TGIF2LYQ8IUE0 185 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 DMRTC2Q8IXT2 367 aaPredicted RBP9.19□□□□□ -0.94
SS18-207ENST00000577636 STX19Q8N4C7 294 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 RPRMLQ8N4K4 120 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 ACBD4Q8NC06 268 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 FAM71CQ8NEG0 241 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 OR2T33Q8NG76 320 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 LILRB4Q8NHJ6 448 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 FAM57AQ8TBR7 257 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 FANK1Q8TC84 345 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 DGCR14Q96DF8 476 aaKnown RBP9.19□□□□□ -0.94
SS18-207ENST00000577636 PRSS27Q9BQR3 290 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 COPS4Q9BT78 406 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TSSK6Q9BXA6 273 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 POLDIP3Q9BY77 421 aaKnown RBP9.19□□□□□ -0.94
SS18-207ENST00000577636 C12orf10Q9HB07 376 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 MED17Q9NVC6 651 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TVP23BQ9NYZ1 205 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 FLRT3Q9NZU0 649 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 MYOTQ9UBF9 498 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 CPAMD8Q8IZJ3 1885 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TRIM64CA6NLI5 447 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 CLCA1A8K7I4 914 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 FAM47E-STBD1D6RA91 191 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 E9PQ18 207 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SCO2O43819 266 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 XPNPEP2O43895 674 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 PIP5K1CO60331 668 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 NME2P1O60361 137 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 THY1P04216 161 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 FUT4P22083 530 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 NME2P22392 152 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 CXCR1P25024 350 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 EVI2BP34910 448 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SLC1A3P43003 542 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 HTR3AP46098 478 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SLC9A3P48764 834 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 CYB561P49447 251 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 P2RX1P51575 399 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SH3BGRP55822 239 aaPredicted RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 CRYZQ08257 329 aaKnown RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 C17orf67Q0P5P2 114 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SNTB1Q13884 538 aaKnown RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 CD226Q15762 336 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 NEDD8Q15843 81 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 NDUFAF6Q330K2 333 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 ZBED5Q49AG3 693 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 FNDC7Q5VTL7 733 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 OPN5Q6U736 354 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 Q71RC1 249 aaPredicted RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 OAFQ86UD1 273 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 NAV3Q8IVL0 2385 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SULF2Q8IWU5 870 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 DND1Q8IYX4 353 aaKnown RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 C10orf53Q8N6V4 93 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 POGLUT1Q8NBL1 392 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 OR5W2Q8NH69 310 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 B4GALNT2Q8NHY0 566 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 TMEM234Q8WY98 164 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 RORBQ92753 470 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 RFKQ969G6 155 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SGTBQ96EQ0 304 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 SH3YL1Q96HL8 342 aaPredicted RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 SCN2AQ99250 2005 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 DEFB127Q9H1M4 99 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 LIME1Q9H400 295 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 DUSP21Q9H596 190 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 EGLN3Q9H6Z9 239 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 IL20Q9NYY1 176 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 KLRF1Q9NZS2 232 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 H2AFY2Q9P0M6 372 aaPredicted RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 BAIAP2Q9UQB8 552 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 RPL36Q9Y3U8 105 aaKnown RBP9.18□□□□□ -0.94
SS18-207ENST00000577636 TACC2O95359 2948 aa9.18□□□□□ -0.94
SS18-207ENST00000577636 A0A087WUJ7 227 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 KLF4O43474 513 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 TLX2O43763 284 aaPredicted RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 FADS1O60427 444 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 BCAS1O75363 584 aaPredicted RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 WBP4O75554 376 aaKnown RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 OR2J2O76002 312 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 HIST1H2ABP04908 130 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 HOXD4P09016 255 aaPredicted RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 IGFBP2P18065 325 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 MSX1P28360 303 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 SLC6A6P31641 620 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 ALDH3B2P48448 385 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 SUMO3P55854 103 aaPredicted RBP9.17□□□□□ -0.94
SS18-207ENST00000577636 GPR85P60893 370 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 CDK5Q00535 292 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 ZNF117Q03924 483 aa9.17□□□□□ -0.94
SS18-207ENST00000577636 OCLNQ16625 522 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms