RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ATP6AP1LQ52LC2 224 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.57□□□□□ -0.24
VPS53-218ENST00000575207 CMIPQ8IY22 773 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 PDIK1LQ8N165 341 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 GALNT4Q8N4A0 578 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 COX18Q8N8Q8 333 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 MAGOHBQ96A72 148 aaKnown RBP13.57□□□□□ -0.24
VPS53-218ENST00000575207 PIF1Q9H611 641 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 SAP30LQ9HAJ7 183 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 DECR2Q9NUI1 292 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 GIN1Q9NXP7 522 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 TAS2R7Q9NYW3 318 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 TMEM181Q9P2C4 612 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 TEX264Q9Y6I9 313 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 E9PQ18 207 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 TNFRSF13BO14836 293 aaPredicted RBP13.56□□□□□ -0.24
VPS53-218ENST00000575207 ZNF264O43296 627 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 IGHV4-59P01825 116 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 FKBP2P26885 142 aaKnown RBP13.56□□□□□ -0.24
VPS53-218ENST00000575207 PRKAG1P54619 331 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 GKAP1Q5VSY0 366 aaPredicted RBP13.56□□□□□ -0.24
VPS53-218ENST00000575207 CLEC6AQ6EIG7 209 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 OR4F6Q8NGB9 312 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 RHEBL1Q8TAI7 183 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 TMEM234Q8WY98 164 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 GIMAP5Q96F15 307 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 NAA11Q9BSU3 229 aaPredicted RBP13.56□□□□□ -0.24
VPS53-218ENST00000575207 NMUR2Q9GZQ4 415 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 HOXD1Q9GZZ0 328 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 TMEM165Q9HC07 324 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 MIEF1Q9NQG6 463 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 FBLN5Q9UBX5 448 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.56□□□□□ -0.24
VPS53-218ENST00000575207 CHRNA9Q9UGM1 479 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 EGFL7Q9UHF1 273 aa13.56□□□□□ -0.24
VPS53-218ENST00000575207 PLECQ15149 4684 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 IGLV3-9A0A075B6K5 115 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 F5H0A9 414 aaPredicted RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 UBOX5O94941 541 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 IGHV2-70P01814 119 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 ATP6V1C1P21283 382 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 IVDP26440 423 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 APOBEC1P41238 236 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 IER3P46695 156 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 ZNF763Q0D2J5 394 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 DCTN2Q13561 401 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 TRMT5Q32P41 509 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 GPR157Q5UAW9 335 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 DHRS7BQ6IAN0 325 aaPredicted RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 CCDC137Q6PK04 289 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 BTNL3Q6UXE8 466 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 CCDC36Q8IYA8 594 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 SPICQ8N5J4 248 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 ZNF614Q8N883 585 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 C11orf44Q8N8P7 122 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 ANKK1Q8NFD2 765 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 OR9K2Q8NGE7 335 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 SNX33Q8WV41 574 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 DACT3Q96B18 629 aaPredicted RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 OTUB1Q96FW1 271 aaPredicted RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 C16orf58Q96GQ5 468 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 MS4A3Q96HJ5 214 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 THUMPD3Q9BV44 507 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 CCDC106Q9BWC9 280 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 SF3B5Q9BWJ5 86 aaKnown RBP13.55□□□□□ -0.24
VPS53-218ENST00000575207 OR11A1Q9GZK7 315 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 MMP28Q9H239 520 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 SERHL2Q9H4I8 314 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 ACER3Q9NUN7 267 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 TXNDC16Q9P2K2 825 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 SNX6Q9UNH7 406 aa13.55□□□□□ -0.24
VPS53-218ENST00000575207 TPD52L2O43399 206 aaKnown RBP13.54□□□□□ -0.24
VPS53-218ENST00000575207 CLPTM1O96005 669 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 UBL4AP11441 157 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 LYL1P12980 280 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 MAKP20794 623 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 MSX2P35548 267 aaPredicted RBP13.54□□□□□ -0.24
VPS53-218ENST00000575207 SLC35A1P78382 337 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 POU6F2P78424 691 aaPredicted RBP13.54□□□□□ -0.24
VPS53-218ENST00000575207 ARF1P84077 181 aaKnown RBP13.54□□□□□ -0.24
VPS53-218ENST00000575207 EMX1Q04741 257 aaPredicted RBP13.54□□□□□ -0.24
VPS53-218ENST00000575207 HSPB3Q12988 150 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 EXOSC6Q5RKV6 272 aaKnown RBP13.54□□□□□ -0.24
VPS53-218ENST00000575207 SZRD1Q7Z422 152 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 ANKMY2Q8IV38 441 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 KLHL36Q8N4N3 616 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 ZNF75AQ96N20 296 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 MS4A4EQ96PG1 132 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 BTBD2Q9BX70 525 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 LINC00470Q9BZP3 86 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 CENPHQ9H3R5 247 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 B3GNT2Q9NY97 397 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 NPTNQ9Y639 398 aa13.54□□□□□ -0.24
VPS53-218ENST00000575207 SLC22A23A1A5C7 686 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 NPIPB9F8W1W9 429 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 RPL36A-HNRNPH2H7BZ11 118 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 DNALI1O14645 258 aaPredicted RBP13.53□□□□□ -0.24
VPS53-218ENST00000575207 UPK3AO75631 287 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 URI1O94763 535 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 185.8 ms