RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MALRD1Q5VYJ5 2156 aa18.35■□□□□ 0.53
VPS53-216ENST00000574029 ARPC4-TTLL3A0A0A6YYG9 625 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 LOC390937A0A1W2PQ73 354 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 SLC35F4A4IF30 521 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 A8MVM7 634 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 ZNF587BE7ETH6 402 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 SDHDO14521 159 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 FRS3O43559 492 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 KRT33AO76009 404 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 KRT75O95678 551 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 SELENOPP49908 381 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 MVDP53602 400 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 LGALS3BPQ08380 585 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 BNIP2Q12982 314 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 STX3Q13277 289 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 C3orf36Q3SXR2 165 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 LIN52Q52LA3 116 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 BCL2L2Q92843 193 aaPredicted RBP18.34■□□□□ 0.53
VPS53-216ENST00000574029 MSI2Q96DH6 328 aaKnown RBP18.34■□□□□ 0.53
VPS53-216ENST00000574029 FOXN4Q96NZ1 517 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 ADPRHL2Q9NX46 363 aa18.34■□□□□ 0.53
VPS53-216ENST00000574029 LOC100289279A0A1B0GTE1 492 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 OR6C65A6NJZ3 312 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 B9A039 149 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 NPIPB7O75200 414 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 PDE5AO76074 875 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 CRYAAP02489 173 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 SRD5A1P18405 259 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 EFNB3Q15768 340 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 HHATQ5VTY9 493 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 LINGO2Q7L985 606 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 EPHX4Q8IUS5 362 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 CADM2Q8N3J6 435 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 MAGEE2Q8TD90 523 aaPredicted RBP18.33■□□□□ 0.52
VPS53-216ENST00000574029 ZNF317Q96PQ6 595 aaPredicted RBP18.33■□□□□ 0.52
VPS53-216ENST00000574029 ALKBH3Q96Q83 286 aaPredicted RBP18.33■□□□□ 0.52
VPS53-216ENST00000574029 KCNS3Q9BQ31 491 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 SLC6A13Q9NSD5 602 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 P2RX2Q9UBL9 471 aa18.33■□□□□ 0.52
VPS53-216ENST00000574029 IGHV4-61A0A0C4DH41 118 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 RFXANKO14593 260 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 TFPTP0C1Z6 253 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 APEHP13798 732 aaKnown RBP18.32■□□□□ 0.52
VPS53-216ENST00000574029 UBE2NP61088 152 aaKnown RBP18.32■□□□□ 0.52
VPS53-216ENST00000574029 COPZ1P61923 177 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 NAAAQ02083 359 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 BST1Q10588 318 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 ADIPOQQ15848 244 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 ZSWIM7Q19AV6 140 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 FAM120AOSQ5T036 256 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 RNF220Q5VTB9 566 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 C1orf140Q5VVS0 124 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 ANKRD16Q6P6B7 361 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 SLC46A3Q7Z3Q1 461 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 CLIP4Q8N3C7 705 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 FAM169BQ8N8A8 192 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 ANKS4BQ8N8V4 417 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 ANKRD42Q8N9B4 389 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 GLB1L3Q8NCI6 653 aaPredicted RBP18.32■□□□□ 0.52
VPS53-216ENST00000574029 VRK1Q99986 396 aaPredicted RBP18.32■□□□□ 0.52
VPS53-216ENST00000574029 LINC00470Q9BZP3 86 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 NELFAQ9H3P2 528 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 PLK3Q9H4B4 646 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 CHODLQ9H9P2 273 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 CALML5Q9NZT1 146 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 RASD1Q9Y272 281 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 ZNF443Q9Y2A4 671 aaPredicted RBP18.32■□□□□ 0.52
VPS53-216ENST00000574029 CHST2Q9Y4C5 530 aa18.32■□□□□ 0.52
VPS53-216ENST00000574029 A0A096LPI6 279 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 TMEM229AB2RXF0 380 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 NR5A2O00482 541 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 UPK3AO75631 287 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 IGLV1-44P01699 117 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 OR4A8P0C604 315 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 CECR9P0C854 216 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 PRG2P13727 222 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 ETFAP13804 333 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 PPOXP50336 477 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 CRISP3P54108 245 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 PRAMEF8Q5VWM4 474 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 PRAMEF7Q5VXH5 474 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 NIPAL3Q6P499 406 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 IL17RELQ6ZVW7 336 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 SLC38A5Q8WUX1 472 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 C3orf49Q96BT1 292 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 ATP6V1G3Q96LB4 118 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 ZBTB18Q99592 522 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 PAIP2Q9BPZ3 127 aaKnown RBP18.31■□□□□ 0.52
VPS53-216ENST00000574029 C19orf24Q9BVV8 132 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 MOV10Q9HCE1 1003 aaKnown RBP18.31■□□□□ 0.52
VPS53-216ENST00000574029 NKIRAS1Q9NYS0 192 aa18.31■□□□□ 0.52
VPS53-216ENST00000574029 BCHEP06276 602 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 HOXB1P14653 301 aaPredicted RBP18.3■□□□□ 0.52
VPS53-216ENST00000574029 ZNF23P17027 643 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 CALCRP30988 508 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 TUBA1BP68363 451 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 TUBA4AP68366 448 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 LARS2Q15031 903 aaKnown RBP18.3■□□□□ 0.52
VPS53-216ENST00000574029 CARTPTQ16568 116 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 TUBA1AQ71U36 451 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms