RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GUSBP08236 651 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 CECR9P0C854 216 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 LBPP18428 481 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 TCN1P20061 433 aaPredicted RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 FKBP2P26885 142 aaKnown RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 NTF4P34130 210 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 APOBEC1P41238 236 aaKnown RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 SLC16A1P53985 500 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 ATP12AP54707 1039 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 SESN3P58005 492 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 BST1Q10588 318 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 GALNTL6Q49A17 601 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 OTUD3Q5T2D3 398 aaPredicted RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 ANXA8L1Q5VT79 327 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 IL23RQ5VWK5 629 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 AP1ARQ63HQ0 302 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 C17orf107Q6ZR85 190 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 C1orf229Q6ZS94 237 aaPredicted RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 AAED1Q7RTV5 226 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 CDK20Q8IZL9 346 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 SIGLECL1Q8N7X8 197 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 ZNF781Q8N8C0 355 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 GLB1L3Q8NCI6 653 aaPredicted RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 SFXN5Q8TD22 340 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 ADAMTS15Q8TE58 950 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 UBE2FQ969M7 185 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 CIDECQ96AQ7 238 aaPredicted RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 RAB39BQ96DA2 213 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 EGLN2Q96KS0 407 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 C7orf26Q96N11 449 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 TSSK3Q96PN8 268 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 STACQ99469 402 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 C7orf69Q9H7B7 122 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS53-207ENST00000570510 DUSP22Q9NRW4 184 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 ZCCHC3Q9NUD5 404 aaKnown RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 MRGBPQ9NV56 204 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 SH3BP4Q9P0V3 963 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 FAF1Q9UNN5 650 aaPredicted RBP9.56□□□□□ -0.88
VPS53-207ENST00000570510 HDGFL3Q9Y3E1 203 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 NOX1Q9Y5S8 564 aa9.56□□□□□ -0.88
VPS53-207ENST00000570510 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 DUXAA6NLW8 204 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 TMEM233B4DJY2 109 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 ZNF587BE7ETH6 402 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 M0QZ24 198 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 ANKRD28O15084 1053 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 ITM2AO43736 263 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 AGR2O95994 175 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 CCNA2P20248 432 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 BGNP21810 368 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 COL8A2P25067 703 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 CALCRP30988 508 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 MRPL19P49406 292 aaKnown RBP9.55□□□□□ -0.88
VPS53-207ENST00000570510 BAMBIQ13145 260 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 DAG1Q14118 895 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 LASP1Q14847 261 aaKnown RBP9.55□□□□□ -0.88
VPS53-207ENST00000570510 OCLNQ16625 522 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 TBRG1Q3YBR2 411 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 FBLN7Q53RD9 439 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 DCST2Q5T1A1 773 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 ANKRD26P1Q6NSI1 321 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 CARM1Q86X55 608 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 OR56A1Q8NGH5 318 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 GIMAP5Q96F15 307 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 AURKBQ96GD4 344 aaPredicted RBP9.55□□□□□ -0.88
VPS53-207ENST00000570510 MAELQ96JY0 434 aaKnown RBP9.55□□□□□ -0.88
VPS53-207ENST00000570510 C3orf30Q96M34 536 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 GPA33Q99795 319 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 ZNF416Q9BWM5 594 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 C1QTNF5Q9BXJ0 243 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 PIGUQ9H490 435 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 AKTIPQ9H8T0 292 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 ZNF275Q9NSD4 429 aaPredicted RBP9.55□□□□□ -0.88
VPS53-207ENST00000570510 TMEM181Q9P2C4 612 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 CHRNA9Q9UGM1 479 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 FIS1Q9Y3D6 152 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 FLVCR1Q9Y5Y0 555 aa9.55□□□□□ -0.88
VPS53-207ENST00000570510 NBEAL2Q6ZNJ1 2754 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 A0A096LPE4 126 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 A0A1W2PPZ6 126 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 WDR91A4D1P6 747 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 WNT9BO14905 357 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 ATP8B1O43520 1251 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 AKAP10O43572 662 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 PLPP2O43688 288 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 LGI1O95970 557 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 AK1P00568 194 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 CSTAP01040 98 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 HMGN2P05204 90 aaKnown RBP9.54□□□□□ -0.88
VPS53-207ENST00000570510 UBTFL6P0CB48 400 aaPredicted RBP9.54□□□□□ -0.88
VPS53-207ENST00000570510 IDO1P14902 403 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 GATA3P23771 443 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 GCH1P30793 250 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 PCGF2P35227 344 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 CLK1P49759 484 aaKnown RBP9.54□□□□□ -0.88
VPS53-207ENST00000570510 LMO4P61968 165 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 TUBA1BP68363 451 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 TUBA4AP68366 448 aa9.54□□□□□ -0.88
VPS53-207ENST00000570510 SLC35A1P78382 337 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms