RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RAB3IPQ96QF0 476 aaPredicted RBP8.28□□□□□ -1.08
VPS35-211ENST00000569950 TRIB1Q96RU8 372 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ZNF587Q96SQ5 575 aaPredicted RBP8.28□□□□□ -1.08
VPS35-211ENST00000569950 PKP2Q99959 881 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 VKORC1Q9BQB6 163 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 PSD2Q9BQI7 771 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 FANCFQ9NPI8 374 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 ALKBH4Q9NXW9 302 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 TAS2R5Q9NYW4 299 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 DNAJB9Q9UBS3 223 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 Q9UFV3 132 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 SH3BGRL2Q9UJC5 107 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 AP4S1Q9Y587 144 aa8.28□□□□□ -1.08
VPS35-211ENST00000569950 SPIN1Q9Y657 262 aaPredicted RBP8.28□□□□□ -1.08
VPS35-211ENST00000569950 TRGV8A0A0C4DH27 118 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 SLC22A20A6NK97 555 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 FIGNL2A6NMB9 653 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 PLPP3O14495 311 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 PRRG2O14669 202 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 CLOCKO15516 846 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 LRRTM2O43300 516 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 TRAF3IP2O43734 574 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 SS18L1O75177 396 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 PTP4A3O75365 173 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 OR7A10O76100 309 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 AKR7A3O95154 331 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 AHSA1O95433 338 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 CH25HO95992 272 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 CST1P01037 141 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 CGAP01215 116 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 HOXD4P09016 255 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 HLA-DOBP13765 273 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 GABRA1P14867 456 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 PTGER4P35408 488 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 TIMP3P35625 211 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 KIR2DL2P43627 348 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 OR2B6P58173 313 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 ELF3P78545 371 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 RBPJQ06330 500 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 FOXD4Q12950 439 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 SLC17A1Q14916 467 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 C4orf17Q53FE4 359 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 FGD3Q5JSP0 725 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 C1orf94Q6P1W5 598 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 TTC33Q6PID6 262 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 B3GNT6Q6ZMB0 384 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 FCRLAQ7L513 359 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 CYP4Z1Q86W10 505 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 KIF18BQ86Y91 864 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 EPHX4Q8IUS5 362 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 RNF113BQ8IZP6 322 aaKnown RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 ADPRHL1Q8NDY3 354 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 OR9Q2Q8NGE9 314 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 CPNE4Q96A23 557 aaPredicted RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 BPIFA2Q96DR5 249 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 FAM46AQ96IP4 442 aaKnown RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 RSRC1Q96IZ7 334 aaKnown RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 ALPK1Q96QP1 1244 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 EPYCQ99645 322 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 FKRPQ9H9S5 495 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 BCO1Q9HAY6 547 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 S100A14Q9HCY8 104 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 MRPL39Q9NYK5 338 aaKnown RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 FAM32AQ9Y421 112 aaKnown RBP8.27□□□□□ -1.09
VPS35-211ENST00000569950 U3KQV3 271 aa8.27□□□□□ -1.09
VPS35-211ENST00000569950 HECTD1Q9ULT8 2610 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 LOC102725191A0A1B0GVB3 256 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 TNFRSF11BO00300 401 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 RRP9O43818 475 aaKnown RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 RCBTB2O95199 551 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 MT-ATP6P00846 226 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 LDLRP01130 860 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 GASTP01350 101 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 IFI30P13284 250 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 HOXB6P17509 224 aaKnown RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 GCKP35557 465 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 GPR4P46093 362 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 RPS3AP61247 264 aaKnown RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 CSNK2A1P68400 391 aaPredicted RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 SLC35A1P78382 337 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 PMPCAQ10713 525 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 PDK3Q15120 406 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 POU4F3Q15319 338 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 SGCBQ16585 318 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 RIPPLY2Q5TAB7 128 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 FAHD1Q6P587 224 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 VWA1Q6PCB0 445 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 THSD4Q6ZMP0 1018 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 ZNF730Q6ZMV8 503 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 AMIGO2Q86SJ2 522 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 FJX1Q86VR8 437 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 CCDC71Q8IV32 467 aaPredicted RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 GCNT2Q8N0V5 402 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 KDM8Q8N371 416 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 SCAIQ8N9R8 606 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 RELL2Q8NC24 303 aaPredicted RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 OR13C2Q8NGS9 318 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 MOSPD2Q8NHP6 518 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 PRR7Q8TB68 274 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 SLC25A36Q96CQ1 311 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms