RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HIST1H2AGP0C0S8 130 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 FAM86B2P0C5J1 330 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CCL2P13500 99 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ETS1P14921 441 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 HIST1H2ADP20671 130 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FGF7P21781 194 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 GLRA1P23415 457 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 STOMP27105 288 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ABCD3P28288 659 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 GCH1P30793 250 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 COILP38432 576 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 RPS9P46781 194 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 CDX1P47902 265 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 GABRA4P48169 554 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 COMPP49747 757 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 NUDT2P50583 147 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 NOVA1P51513 510 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 TAS2R39P59534 338 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RPS20P60866 119 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 BTG1P62324 171 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RPS6P62753 249 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 PPP3R1P63098 170 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RPL19P84098 196 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 MYL7Q01449 175 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SPIBQ01892 262 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SPOCK1Q08629 439 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ZNF543Q08ER8 600 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C2orf80Q0P641 193 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 BST1Q10588 318 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 MTAPQ13126 283 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TSTA3Q13630 321 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 CEACAM7Q14002 265 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLC17A1Q14916 467 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLC10A1Q14973 349 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RSU1Q15404 277 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SURF2Q15527 256 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 ATP6V1FQ16864 119 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CBWD6Q4V339 395 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 MPPE1Q53F39 396 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 KLHL22Q53GT1 634 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 GLRA4Q5JXX5 417 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C10orf91Q5T1B1 145 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FAM182AQ5T1J6 154 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 KHDRBS2Q5VWX1 349 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 MORN5Q5VZ52 161 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 HIST2H2AA3Q6FI13 130 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 NADSYN1Q6IA69 706 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ADNP2Q6IQ32 1131 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CES5AQ6NT32 575 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TMEM88Q6PEY1 159 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLC22A25Q6T423 547 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TMEM107Q6UX40 140 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PAMR1Q6UXH9 720 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C3P1Q6ZMU1 363 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FAM83HQ6ZRV2 1179 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 SSX7Q7RTT5 188 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SSX6Q7RTT6 188 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TCF24Q7RTU0 167 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PLPPR4Q7Z2D5 763 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ZNF720Q7Z2F6 126 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PID1Q7Z2X4 250 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ABI3BPQ7Z7G0 1075 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 S100A7AQ86SG5 101 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 KCNMB4Q86W47 210 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ZNF573Q86YE8 665 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PDZD9Q8IXQ8 264 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ZCCHC9Q8N567 271 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 FAM86B1Q8N7N1 296 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 DUSP18Q8NEJ0 188 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 STXBP6Q8NFX7 210 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 OR13D1Q8NGV5 346 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 OR11L1Q8NGX0 322 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 OR6K3Q8NGY3 331 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 OR8U1Q8NH10 309 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 NUBPLQ8TB37 319 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CSGALNACT1Q8TDX6 532 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ADAMTS15Q8TE58 950 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CXorf40AQ8TE69 158 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TBCKQ8TEA7 893 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 HSD17B8Q92506 261 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FCGR1BQ92637 280 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 APBB2Q92870 758 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 UCN3Q969E3 161 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 ERGIC1Q969X5 290 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLC35C1Q96A29 364 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLCO4A1Q96BD0 722 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SPSB1Q96BD6 273 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 COQ8BQ96D53 544 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CMBLQ96DG6 245 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SAT2Q96F10 170 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLC41A2Q96JW4 573 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C4orf36Q96KX1 117 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 MARK4Q96L34 752 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FCRL1Q96LA6 429 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C12orf66Q96MD2 445 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SLC22A12Q96S37 553 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 STACQ99469 402 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 PHB2Q99623 299 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 LPAR4Q99677 370 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 NPAS2Q99743 824 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms