RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 EVA1AQ9H8M9 152 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 PARPBPQ9NWS1 579 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 GID8Q9NWU2 228 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 SEC14L4Q9UDX3 406 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 EDARQ9UNE0 448 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 SLC9A8Q9Y2E8 581 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 PRRC2AP48634 2157 aaKnown RBP13.25□□□□□ -0.29
VPS39-210ENST00000568357 PDLIM1O00151 329 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 FMO6PO60774 539 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 PLAUP00749 431 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 THY1P04216 161 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 DRD4P21917 467 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 NCALDP61601 193 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 FAPQ12884 760 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 KEAP1Q14145 624 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 TSPO2Q5TGU0 170 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 SEZ6L2Q6UXD5 910 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 CASP12Q6UXS9 341 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 CREB3L2Q70SY1 520 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 RANBP3LQ86VV4 465 aaPredicted RBP13.25□□□□□ -0.29
VPS39-210ENST00000568357 TSPYL5Q86VY4 417 aaPredicted RBP13.25□□□□□ -0.29
VPS39-210ENST00000568357 EPHX4Q8IUS5 362 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 VANGL1Q8TAA9 524 aaPredicted RBP13.25□□□□□ -0.29
VPS39-210ENST00000568357 RNF217Q8TC41 542 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 TMEM45BQ96B21 275 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 FOXC2Q99958 501 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 REPIN1Q9BWE0 567 aaKnown RBP13.25□□□□□ -0.29
VPS39-210ENST00000568357 CXXC4Q9H2H0 198 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 SLC7A10Q9NS82 523 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 ASB6Q9NWX5 421 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 CMTM6Q9NX76 183 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 GMPR2Q9P2T1 348 aaKnown RBP13.25□□□□□ -0.29
VPS39-210ENST00000568357 MALT1Q9UDY8 824 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 AKAP6Q13023 2319 aa13.25□□□□□ -0.29
VPS39-210ENST00000568357 FREM1Q5H8C1 2179 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 TRAV36DV7A0A075B6V5 113 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 AIM2O14862 343 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 FZD7O75084 574 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 VAMP5O95183 116 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 LYPD3O95274 346 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 CD53P19397 219 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 GGT1P19440 569 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 PTNP21246 168 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 CBLP22681 906 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 LSP1P33241 339 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 LTBQ06643 244 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 VEZF1Q14119 521 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 STK11Q15831 433 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 ENTPD8Q5MY95 495 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 LINC00114Q6XXX2 140 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 AAED1Q7RTV5 226 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 SLC26A7Q8TE54 656 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 MBD6Q96DN6 1003 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 USB1Q9BQ65 265 aaKnown RBP13.24□□□□□ -0.29
VPS39-210ENST00000568357 TMEM204Q9BSN7 226 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 FAM107BQ9H098 131 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 MYLK2Q9H1R3 596 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 SELENONQ9NZV5 590 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 RASD1Q9Y272 281 aa13.24□□□□□ -0.29
VPS39-210ENST00000568357 GMNCA6NCL1 334 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 CPSF4LA6NMK7 179 aaKnown RBP13.23□□□□□ -0.29
VPS39-210ENST00000568357 M0R082 166 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 OR2T1O43869 369 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 SNX3O60493 162 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 RAD51DO75771 328 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ITGA5P08648 1049 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 GRPRP30550 384 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 LGALS3BPQ08380 585 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ACKR1Q16570 336 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 DEFB113Q30KQ7 82 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 TIMM23BQ5SRD1 257 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 FAM69AQ5T7M9 428 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 C9orf135Q5VTT2 229 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ERICH5Q6P6B1 374 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ZNF613Q6PF04 617 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 C5orf46Q6UWT4 87 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 WDR88Q6ZMY6 472 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 SLC15A3Q8IY34 581 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ZNF417Q8TAU3 575 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ADAMTS16Q8TE57 1224 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 MUS81Q96NY9 551 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 ZNF587Q96SQ5 575 aaPredicted RBP13.23□□□□□ -0.29
VPS39-210ENST00000568357 MDFIQ99750 246 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 UBTD1Q9HAC8 227 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 TAS2R16Q9NYV7 291 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 B3GAT1Q9P2W7 334 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 UPB1Q9UBR1 384 aa13.23□□□□□ -0.29
VPS39-210ENST00000568357 CIB4A0PJX0 185 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 DPRXA6NFQ7 191 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 OR5H1A6NKK0 313 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 FAM220BPB1ANY3 271 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 LRRN3E7EW58 273 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 MS4A18H0YCH9 400 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 BGLAPP02818 100 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 TNFRSF1BP20333 461 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 SELENOPP49908 381 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 NR1H2P55055 460 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 FOXD4Q12950 439 aaPredicted RBP13.22□□□□□ -0.29
VPS39-210ENST00000568357 PPA1Q15181 289 aa13.22□□□□□ -0.29
VPS39-210ENST00000568357 GABRA6Q16445 453 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms