RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 EIF2B2P49770 351 aaKnown RBP18.45■□□□□ 0.54
CLN3-230ENST00000568076 NRG3P56975 720 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 SCN1BQ07699 218 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 SELENBP1Q13228 472 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 P2RY14Q15391 338 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 TRAM1Q15629 374 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 ALG10Q5BKT4 473 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 RHBDD2Q6NTF9 364 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 SLC29A4Q7RTT9 530 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 C7orf57Q8NEG2 295 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 OR6K6Q8NGW6 343 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 DEPDC7Q96QD5 511 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 C12orf10Q9HB07 376 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 PRDM6Q9NQX0 595 aa18.45■□□□□ 0.54
CLN3-230ENST00000568076 A0A1W2PRG6 482 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 OGG1O15527 345 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 NDUFB5O43674 189 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 F13BP05160 661 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 CTXN1P60606 82 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 ACTA2P62736 377 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 ACTG2P63267 376 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 IDNKQ5T6J7 187 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 LSM14AQ8ND56 463 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 TP53INP1Q96A56 240 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 TSSK2Q96PF2 358 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 RPRD1BQ9NQG5 326 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 NCDNQ9UBB6 729 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 ZNF346Q9UL40 294 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 KHNYNO15037 678 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 TIAF1O95411 115 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 APEHP13798 732 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 RPS5P46782 204 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 PNLIPRP2P54317 469 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 TPTEP56180 551 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 OR10A3P58181 314 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 RPL18Q07020 188 aaKnown RBP18.44■□□□□ 0.54
CLN3-230ENST00000568076 ASAH1Q13510 395 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 IL10RAQ13651 578 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 CDK5R1Q15078 307 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 CACNA1EQ15878 2313 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 ACSM3Q53FZ2 586 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 HBMQ6B0K9 141 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 MZT2AQ6P582 158 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 EXD3Q8N9H8 876 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 STT3BQ8TCJ2 826 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 TGIF2Q9GZN2 237 aa18.44■□□□□ 0.54
CLN3-230ENST00000568076 A0A0G2JK05 382 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 A0A1W2PQM1 296 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 CPED1A4D0V7 1026 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 OR6C76A6NM76 312 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 TOX3O15405 576 aaPredicted RBP18.43■□□□□ 0.54
CLN3-230ENST00000568076 GLCEO94923 617 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 ITPKBP27987 946 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 SDHAP31040 664 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 THBS2P35442 1172 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 C1QL3Q5VWW1 255 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 SNX33Q8WV41 574 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 SMIM19Q96E16 107 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 DNAJA3Q96EY1 480 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 ALG12Q9BV10 488 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 TBL1XR1Q9BZK7 514 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 ACOXLQ9NUZ1 547 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 SRPK3Q9UPE1 567 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 PCDHGB7Q9Y5F8 929 aa18.43■□□□□ 0.54
CLN3-230ENST00000568076 A0A1W2PPC1 479 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 PRR32B1ATL7 298 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 EIF4E2O60573 245 aaKnown RBP18.42■□□□□ 0.54
CLN3-230ENST00000568076 TXNDC12O95881 172 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 SIRPAP78324 504 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 POMZP3Q6PJE2 187 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 METAP1DQ6UB28 335 aaPredicted RBP18.42■□□□□ 0.54
CLN3-230ENST00000568076 NUP54Q7Z3B4 507 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 JAZF1Q86VZ6 243 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 MS4A15Q8N5U1 240 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 ACOT12Q8WYK0 555 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 TSPAN32Q96QS1 320 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 C11orf54Q9H0W9 315 aaPredicted RBP18.42■□□□□ 0.54
CLN3-230ENST00000568076 B3GAT2Q9NPZ5 323 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 GNG8Q9UK08 70 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 SLC6A5Q9Y345 797 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 A0A0C4DFX4 3053 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 IGLV3-12A0A075B6K2 115 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 DCTN6O00399 190 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 ADAM10O14672 748 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 PLA2G10O15496 165 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 FADS1O60427 444 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 PNLIPP16233 465 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 ELK1P19419 428 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 GRPRP30550 384 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 CASP3P42574 277 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 GDI2P50395 445 aaKnown RBP18.42■□□□□ 0.54
CLN3-230ENST00000568076 GBX2P52951 348 aaPredicted RBP18.42■□□□□ 0.54
CLN3-230ENST00000568076 SLC25A1P53007 311 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 MESTQ5EB52 335 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 SFXN4Q6P4A7 337 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 C16orf47Q6ZP98 133 aaPredicted RBP18.42■□□□□ 0.54
CLN3-230ENST00000568076 NANOGNBQ7Z5D8 188 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 ZNF511Q8NB15 262 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 SAP25Q8TEE9 199 aa18.42■□□□□ 0.54
CLN3-230ENST00000568076 SLC7A5P2Q9GIP4 190 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms