RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 KLHL24Q6TFL4 600 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 MIER2Q8N344 545 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 ZNF525Q8N782 197 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 ELOA3Q8NG57 546 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 SPATA3Q8NHX4 192 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 STK35Q8TDR2 534 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 TNFRSF13CQ96RJ3 184 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 CACYBPQ9HB71 228 aaKnown RBP14.05□□□□□ -0.16
CLN3-229ENST00000567963 OBP2BQ9NPH6 170 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 TMEM45AQ9NWC5 275 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 MOKQ9UQ07 419 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 SVEP1Q4LDE5 3571 aa14.05□□□□□ -0.16
CLN3-229ENST00000567963 A8MV72 311 aaPredicted RBP14.04□□□□□ -0.16
CLN3-229ENST00000567963 TMEM229AB2RXF0 380 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 ATP6V1G2-DDX39BF2Z307 99 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 CLIC1O00299 241 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 KLF11O14901 512 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 NUDT7P0C024 238 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 CHRNB3Q05901 458 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 LGALS3BPQ08380 585 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 LOXL1Q08397 574 aaPredicted RBP14.04□□□□□ -0.16
CLN3-229ENST00000567963 PRAMEF8Q5VWM4 474 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 PRAMEF7Q5VXH5 474 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 EPHX4Q8IUS5 362 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 MFSD8Q8NHS3 518 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 FAM168AQ92567 244 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 MAL2Q969L2 176 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 TLCD1Q96CP7 247 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 PAIP1Q9H074 479 aaKnown RBP14.04□□□□□ -0.16
CLN3-229ENST00000567963 BCL2L10Q9HD36 194 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 RASD1Q9Y272 281 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 PMF1-BGLAPU3KQ54 211 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 COL6A5A8TX70 2615 aa14.04□□□□□ -0.16
CLN3-229ENST00000567963 ATRQ13535 2644 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 OR6C65A6NJZ3 312 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 FTCDNL1E5RQL4 147 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 ZNF587BE7ETH6 402 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 SLC25A16P16260 332 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 EFNA4P52798 201 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 HOXC5Q00444 222 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 EGR4Q05215 589 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 FADDQ13158 208 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 SWI5Q1ZZU3 235 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 MST1LQ2TV78 715 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 TMEM249Q2WGJ8 235 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 TBRG1Q3YBR2 411 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 HMBOX1Q6NT76 420 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 NIPAL3Q6P499 406 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 SLC2A7Q6PXP3 512 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 EPGNQ6UW88 154 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 OR1K1Q8NGR3 316 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 SLC35B4Q969S0 331 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 PTDSS2Q9BVG9 487 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 RAD21L1Q9H4I0 556 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 TMBIM4Q9HC24 238 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 A4GALTQ9NPC4 353 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 USH1CQ9Y6N9 552 aa14.03□□□□□ -0.16
CLN3-229ENST00000567963 ARFGEF3Q5TH69 2177 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 IGHV1-18A0A0C4DH31 117 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 LGI1O95970 557 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 F12P00748 615 aaPredicted RBP14.02□□□□□ -0.16
CLN3-229ENST00000567963 BMP2P12643 396 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 HOXB9P17482 250 aaPredicted RBP14.02□□□□□ -0.16
CLN3-229ENST00000567963 PAX7P23759 505 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 RPS5P46782 204 aaKnown RBP14.02□□□□□ -0.16
CLN3-229ENST00000567963 C6orf52Q5T4I8 152 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 LINGO2Q7L985 606 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 KDM8Q8N371 416 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 C10orf105Q8TEF2 133 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 NANOS1Q8WY41 292 aaKnown RBP14.02□□□□□ -0.16
CLN3-229ENST00000567963 BCL2L2Q92843 193 aaPredicted RBP14.02□□□□□ -0.16
CLN3-229ENST00000567963 SLC25A36Q96CQ1 311 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 ALKBH3Q96Q83 286 aaPredicted RBP14.02□□□□□ -0.16
CLN3-229ENST00000567963 SLC38A2Q96QD8 506 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 LINC00470Q9BZP3 86 aa14.02□□□□□ -0.16
CLN3-229ENST00000567963 UPK3AO75631 287 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 AHSA1O95433 338 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 PNMTP11086 282 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 MRPL19P49406 292 aaKnown RBP14.01□□□□□ -0.17
CLN3-229ENST00000567963 VLDLRP98155 873 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 CHRFAM7AQ494W8 412 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 PODNL1Q6PEZ8 512 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 BBS10Q8TAM1 723 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 MAGEE2Q8TD90 523 aaPredicted RBP14.01□□□□□ -0.17
CLN3-229ENST00000567963 PROX1Q92786 737 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 FBXO17Q96EF6 278 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 KTI12Q96EK9 354 aaPredicted RBP14.01□□□□□ -0.17
CLN3-229ENST00000567963 ZNF317Q96PQ6 595 aaPredicted RBP14.01□□□□□ -0.17
CLN3-229ENST00000567963 RSPO3Q9BXY4 272 aaPredicted RBP14.01□□□□□ -0.17
CLN3-229ENST00000567963 MXRA5Q9NR99 2828 aa14.01□□□□□ -0.17
CLN3-229ENST00000567963 ARPC4-TTLL3A0A0A6YYG9 625 aa14□□□□□ -0.17
CLN3-229ENST00000567963 NR5A2O00482 541 aa14□□□□□ -0.17
CLN3-229ENST00000567963 LY6HO94772 140 aa14□□□□□ -0.17
CLN3-229ENST00000567963 ZNF432O94892 652 aa14□□□□□ -0.17
CLN3-229ENST00000567963 IFNA2P01563 188 aa14□□□□□ -0.17
CLN3-229ENST00000567963 CSF3P09919 207 aa14□□□□□ -0.17
CLN3-229ENST00000567963 ETS2P15036 469 aa14□□□□□ -0.17
CLN3-229ENST00000567963 ZNF43P17038 809 aa14□□□□□ -0.17
CLN3-229ENST00000567963 UBE2NP61088 152 aaKnown RBP14□□□□□ -0.17
CLN3-229ENST00000567963 ANKRD16Q6P6B7 361 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms