RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF426Q9BUY5 554 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 OSBPL11Q9BXB4 747 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC2A11Q9BYW1 496 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 PORCNQ9H237 461 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 HRH4Q9H3N8 390 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TMEM38AQ9H6F2 299 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 OLAHQ9NV23 265 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TMEM45AQ9NWC5 275 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SEC14L4Q9UDX3 406 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ZDHHC2Q9UIJ5 367 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SCP2D1Q9UJQ7 156 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC25A13Q9UJS0 675 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 GNG8Q9UK08 70 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 MRTO4Q9UKD2 239 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 PITPNC1Q9UKF7 332 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 UGT2A1Q9Y4X1 527 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TSSC4Q9Y5U2 329 aaPredicted RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 EMSYQ7Z589 1322 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ADGRA3Q8IWK6 1321 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 A0A1W2PP64 1363 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TEX14Q8IWB6 1497 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ARHGAP35Q9NRY4 1499 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SHANK2Q9UPX8 1470 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SHROOM2Q13796 1616 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 TRAV26-1A0A087WT03 109 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 A0A1B0GTI1 187 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 MEIOCA2RUB1 952 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CCDC182A6NF36 153 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 A8MU76 341 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 HEPACAM2A8MVW5 462 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 P2RY10O00398 339 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CXCR6O00574 342 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 DLGAP1O14490 977 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ZNF749O43361 778 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ENTPD5O75356 428 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 RFPL2O75678 378 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 OR6A2O95222 327 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 GOT2P00505 430 aaKnown RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 SNHG28P0DPA3 235 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 FCGR1AP12314 374 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 COX7A2P14406 83 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 MYOGP15173 224 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ST6GAL1P15907 406 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 NELFEP18615 380 aaKnown RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 NPR2P20594 1047 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 SERPINA2P20848 420 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ACADLP28330 430 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 DDTP30046 118 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 FCGR2BP31994 310 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 SSTR5P35346 364 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ADRA1AP35348 466 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ACVR1BP36896 505 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 COILP38432 576 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 RFC3P40938 356 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 HTR6P50406 440 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 NR0B1P51843 470 aaKnown RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 CNN1P51911 297 aaKnown RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 UCNP55089 124 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 WNT4P56705 351 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 KLF3P57682 345 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 EMX2Q04743 252 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 SLC10A7Q0GE19 358 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 APOFQ13790 326 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 GRB14Q14449 540 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 DLG2Q15700 870 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 PSMD5Q16401 504 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 HLFQ16534 295 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 MICBQ29980 383 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 SMIM21Q3B7S5 101 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ITPRIPL2Q3MIP1 535 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 DPCR1Q3MIW9 517 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 GALNTL6Q49A17 601 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 GCSAMLQ5JQS6 135 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 DCAF10Q5QP82 559 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 SLC8B1Q6J4K2 584 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 FAM45BPQ6NSW5 357 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 DNM1P34Q6PK57 102 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 TMEM107Q6UX40 140 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ZNF793Q6ZN11 406 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 MBOAT1Q6ZNC8 495 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 TMEM182Q6ZP80 229 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 LINGO2Q7L985 606 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 RAB43Q86YS6 212 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ATPAF2Q8N5M1 289 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 GDPD1Q8N9F7 314 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 OR4F15Q8NGB8 312 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 OR5L1Q8NGL2 311 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 OCC1Q8TAD7 63 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ZNF420Q8TAQ5 688 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 MRAPQ8TCY5 172 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 NRGNQ92686 78 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CREB3L1Q96BA8 519 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 FAF2Q96CS3 445 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 POM121L2Q96KW2 1035 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 NOL4LQ96MY1 436 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 ACCSQ96QU6 501 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 EPYCQ99645 322 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CLSTN3Q9BQT9 956 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 RSG1Q9BU20 258 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 KATNB1Q9BVA0 655 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms