RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TAMM41Q96BW9 452 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 MUCL1Q96DR8 90 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 KTI12Q96EK9 354 aaPredicted RBP11.84□□□□□ -0.51
CLK3-213ENST00000563842 TMEM43Q9BTV4 400 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 TAS2R16Q9NYV7 291 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 MALT1Q9UDY8 824 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 B3GALT5Q9Y2C3 310 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 CORINQ9Y5Q5 1042 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 ARID1AO14497 2285 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 ALPK2Q86TB3 2170 aa11.84□□□□□ -0.51
CLK3-213ENST00000563842 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 TRAPPC13A5PLN9 417 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 CCT8L1PA6NM43 557 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 FTCDNL1E5RQL4 147 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 KLF4O43474 513 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 TPST2O60704 377 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 FZD7O75084 574 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 LYZL6O75951 148 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 ZNF43P17038 809 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 GGT1P19440 569 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 IGHV1-2P23083 117 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 KDELR2P33947 212 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 CDH12P55289 794 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 FAPQ12884 760 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 ENTPD8Q5MY95 495 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 TIMM23BQ5SRD1 257 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 C1QTNF12Q5T7M4 302 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 C22orf34Q6ZV56 151 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 H1FNTQ75WM6 255 aaPredicted RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 ZNF433Q8N7K0 673 aaPredicted RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 ADPRHL1Q8NDY3 354 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 VANGL1Q8TAA9 524 aaPredicted RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 LZICQ8WZA0 190 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 NRGNQ92686 78 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 TAAR8Q969N4 342 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 MPP4Q96JB8 637 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 OXGR1Q96P68 337 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 PTDSS2Q9BVG9 487 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 PRR14Q9BWN1 585 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 ASPNQ9BXN1 380 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 POLR2J2Q9GZM3 115 aaKnown RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 PCDHAC1Q9H158 963 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 POLR2J3Q9H1A7 115 aaKnown RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 MYLK2Q9H1R3 596 aa11.83□□□□□ -0.52
CLK3-213ENST00000563842 ESRP2Q9H6T0 727 aaKnown RBP11.83□□□□□ -0.52
CLK3-213ENST00000563842 CSMD1Q96PZ7 3565 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 MED13LQ71F56 2210 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 IGKV1D-42A0A075B6H8 117 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 CPSF4LA6NMK7 179 aaKnown RBP11.82□□□□□ -0.52
CLK3-213ENST00000563842 AKAP8O43823 692 aaKnown RBP11.82□□□□□ -0.52
CLK3-213ENST00000563842 KRT33AO76009 404 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 MT-ATP6P00846 226 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 IGHV3-9P01782 118 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 IFNA8P32881 189 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 NUDT2P50583 147 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 P2RY4P51582 365 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 IST1P53990 364 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 TSC22D1Q15714 1073 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 TAB1Q15750 504 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 STK11Q15831 433 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 LRRC23Q53EV4 343 aaPredicted RBP11.82□□□□□ -0.52
CLK3-213ENST00000563842 TTC33Q6PID6 262 aaPredicted RBP11.82□□□□□ -0.52
CLK3-213ENST00000563842 CREB3L2Q70SY1 520 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 TREML1Q86YW5 311 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 SLC15A3Q8IY34 581 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 SCAIQ8N9R8 606 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 ADAMTS16Q8TE57 1224 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 MBD6Q96DN6 1003 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 PLPPR2Q96GM1 343 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 FOXC2Q99958 501 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 WFDC6Q9BQY6 131 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 SLCO5A1Q9H2Y9 848 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 LIME1Q9H400 295 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 CCM2LQ9NUG4 571 aaPredicted RBP11.82□□□□□ -0.52
CLK3-213ENST00000563842 PLEKHA6Q9Y2H5 1048 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 ARL2BPQ9Y2Y0 163 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 SH3GLB1Q9Y371 365 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 ZFHX3Q15911 3703 aa11.82□□□□□ -0.52
CLK3-213ENST00000563842 RAI1Q7Z5J4 1906 aaPredicted RBP11.82□□□□□ -0.52
CLK3-213ENST00000563842 CSMD2Q7Z408 3487 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 LOC102725191A0A1B0GVB3 256 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 OR5H1A6NKK0 313 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 M0R082 166 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 GSTA4O15217 222 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 SIAH2O43255 324 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 DCTN3O75935 186 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 NQO1P15559 274 aaKnown RBP11.81□□□□□ -0.52
CLK3-213ENST00000563842 EDNRAP25101 427 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 MPGP29372 298 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 GRPRP30550 384 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 NTF4P34130 210 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 ART1P52961 327 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 GYS2P54840 703 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 SELENOWP63302 87 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 IL1RL1Q01638 556 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 LIPEQ05469 1076 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 C1DQ13901 141 aaKnown RBP11.81□□□□□ -0.52
CLK3-213ENST00000563842 PPA1Q15181 289 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 NPTX1Q15818 432 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms