RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HLA-DOBP13765 273 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 CTSSP25774 331 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 RRM2P31350 389 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 LIMS1P48059 325 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 IST1P53990 364 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 PER3P56645 1201 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 CSNK2A1P68400 391 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 SPIBQ01892 262 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 RASGEF1BQ0VAM2 473 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 ST3GAL3Q11203 375 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 LAPTM4AQ15012 233 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 TRAM2Q15035 370 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 MS4A18Q3C1V0 323 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 OTUD3Q5T2D3 398 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 PDSS1Q5T2R2 415 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 FAM69AQ5T7M9 428 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 HIST2H2BCQ6DN03 193 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 TTC33Q6PID6 262 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 PAQR6Q6TCH4 344 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 NHLRC1Q6VVB1 395 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 EPHX4Q8IUS5 362 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 AQP12AQ8IXF9 295 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 NRMQ8IXM6 262 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 ZNF808Q8N4W9 903 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 CNEP1R1Q8N9A8 125 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 OR4C15Q8NGM1 316 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 LILRB4Q8NHJ6 448 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 MPP4Q96JB8 637 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 ZNF385AQ96PM9 386 aaKnown RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 PIP5K1AQ99755 562 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 GPA33Q99795 319 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 PRRG4Q9BZD6 226 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 OPN3Q9H1Y3 402 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 MAGIXQ9H6Y5 334 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 C12orf49Q9H741 205 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 BCO1Q9HAY6 547 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 NPDC1Q9NQX5 325 aaPredicted RBP8.7□□□□□ -1.02
CLK3-208ENST00000562626 SELENONQ9NZV5 590 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 PRDM4Q9UKN5 801 aa8.7□□□□□ -1.02
CLK3-208ENST00000562626 HRNRQ86YZ3 2850 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 IGKV3D-15A0A087WSY6 115 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 NBPF19A0A087WUL8 3843 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 HSPB2A8KAH6 182 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 CDC42EP2O14613 210 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 DNPH1O43598 174 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 ASAH2BP0C7U1 165 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 IFI30P13284 250 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 ZNF26P17031 533 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 FKBP2P26885 142 aaKnown RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 COL8A1P27658 744 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 CHRNB4P30926 498 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 RBM34P42696 430 aaKnown RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 GPR4P46093 362 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 SLC16A1P53985 500 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 FOXG1P55316 489 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 PRKCDQ05655 676 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 CHRNB3Q05901 458 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 LGALS3BPQ08380 585 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 SNTB1Q13884 538 aaKnown RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 SLC17A1Q14916 467 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 SF3B4Q15427 424 aaKnown RBP eCLIP8.69□□□□□ -1.026e-6■□□□□ 11
CLK3-208ENST00000562626 HSPB2Q16082 182 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 EXOC3L2Q2M3D2 409 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 FGD3Q5JSP0 725 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 ANKRD34AQ69YU3 496 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 ZNF474Q6S9Z5 364 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 FAM214BQ7L5A3 538 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 C10orf53Q8N6V4 93 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 ZNF610Q8N9Z0 462 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 MOSPD2Q8NHP6 518 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 ACOT11Q8WXI4 607 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 GMPPAQ96IJ6 420 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 LRGUKQ96M69 825 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 PSMG3-AS1Q96PY0 264 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 CHID1Q9BWS9 393 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 TAPBPLQ9BX59 468 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 CHST11Q9NPF2 352 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 TIGARQ9NQ88 270 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 PAQR5Q9NXK6 330 aaPredicted RBP8.69□□□□□ -1.02
CLK3-208ENST00000562626 TAS2R5Q9NYW4 299 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 JKAMPQ9P055 326 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 PRSS50Q9UI38 385 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 AURKCQ9UQB9 309 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 FLVCR1Q9Y5Y0 555 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 LYVE1Q9Y5Y7 322 aa8.69□□□□□ -1.02
CLK3-208ENST00000562626 CRYBG3Q68DQ2 2970 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 ADGRG4Q8IZF6 3080 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 A0A1W2PRQ8 180 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 SH3PXD2BA1X283 911 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 PLPP3O14495 311 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 TRAF3IP2O43734 574 aaPredicted RBP8.68□□□□□ -1.02
CLK3-208ENST00000562626 FKBP6O75344 327 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 TIPRLO75663 272 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 OR7A10O76100 309 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 GADD45GO95257 159 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 CLDN14O95500 239 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 PLGP00747 810 aaPredicted RBP8.68□□□□□ -1.02
CLK3-208ENST00000562626 TSPAN19P0C672 248 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 RAP2AP10114 183 aa8.68□□□□□ -1.02
CLK3-208ENST00000562626 FCGR2AP12318 317 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms