RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CENPXA8MT69 81 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 IDH3BO43837 385 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 EIF1BO60739 113 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 DPM1O60762 260 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 RBMXL2O75526 392 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 CLPXO76031 633 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CSN2P05814 226 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 IGFBP1P08833 259 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 PRR35P0CG20 571 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 SLC2A1P11166 492 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 PTGS2P35354 604 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 SMN1Q16637 294 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 MEDAGQ5VYS4 303 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 SLC18B1Q6NT16 456 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CAMKMTQ7Z624 323 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 TTC9Q92623 222 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 FKBP10Q96AY3 582 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 DIRAS2Q96HU8 199 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 TMEM41AQ96HV5 264 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 NIPSNAP1Q9BPW8 284 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 FAM173AQ9BQD7 235 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CRLF2Q9HC73 371 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 UBAP1Q9NZ09 502 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 OSGIN1Q9UJX0 560 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 GPR55Q9Y2T6 319 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 LAMA2P24043 3122 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 FAM90A27PA6NNH2 459 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CRYABP02511 175 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 GNAO1P09471 354 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CCL3P10147 92 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 LIFP15018 202 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 DRD5P21918 477 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 MAGEA2P43356 314 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 IDH3GP51553 393 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 TIGD3Q6B0B8 471 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 H1FNTQ75WM6 255 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 ZNF627Q7L945 461 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 PTOV1Q86YD1 416 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 BHLHE23Q8NDY6 225 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 C9orf43Q8TAL5 461 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 CPT1CQ8TCG5 803 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ARL5BQ96KC2 179 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 KLHL15Q96M94 604 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 TSSK2Q96PF2 358 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 MRPS26Q9BYN8 205 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 KLHL9Q9P2J3 617 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 DTX4Q9Y2E6 619 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 HS3ST3B1Q9Y662 390 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 LOC101059948A0A1B0GTJ6 334 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 PLSCR5A0PG75 271 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ZNF99A8MXY4 864 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 SYT5O00445 386 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 MT-ND2P03891 347 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 FAM87AP0C7U9 286 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 MAKP20794 623 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CHMP24386 653 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 DCKP27707 260 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 HTR5AP47898 357 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 DUSP8Q13202 625 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 FZD5Q13467 585 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 INPP5JQ15735 1006 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 KIF26BQ2KJY2 2108 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ARSKQ6UWY0 536 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 DGAT2L6Q6ZPD8 337 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 MRPL21Q7Z2W9 205 aaKnown RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 MDGA2Q7Z553 956 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ZAR1Q86SH2 424 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 WFDC8Q8IUA0 241 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 OR2L13Q8N349 312 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 LRRC17Q8N6Y2 441 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 OR4F15Q8NGB8 312 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 OR9K2Q8NGE7 335 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 PTPMT1Q8WUK0 201 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 HTRA1Q92743 480 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 UBE2FQ969M7 185 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 SCARF2Q96GP6 870 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 CORINQ9Y5Q5 1042 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ISPDA4D126 451 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 A6NIZ1 184 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 CHP2O43745 196 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 RAP1BP61224 184 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 TSPAN5P62079 268 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 RAP1AP62834 184 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 TRIM16LQ309B1 348 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ZNF628Q5EBL2 1059 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 PGM2L1Q6PCE3 622 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 RASSF6Q6ZTQ3 369 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 RIMKLAQ8IXN7 391 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 PLPP5Q8NEB5 264 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 OR5J2Q8NH18 312 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 ALKBH3Q96Q83 286 aaPredicted RBP8.43□□□□□ -1.06
VPS39-205ENST00000562258 HEATR5BQ9P2D3 2071 aa8.43□□□□□ -1.06
VPS39-205ENST00000562258 TCRBV3S1A0A5B6 114 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 TMEM72A0PK05 275 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ENTPD6O75354 484 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 NKX2-2O95096 273 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 TSPAN31Q12999 210 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PROX2Q3B8N5 592 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 UNQ6126/PRO20091Q6UXV3 157 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 UTS2BQ765I0 119 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms