RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 RAB20Q9NX57 234 aa4.83□□□□□ -1.64
RTF1-204ENST00000558117 EURLQ9NYK6 297 aa4.83□□□□□ -1.64
RTF1-204ENST00000558117 ZNF226Q9NYT6 803 aa4.83□□□□□ -1.64
RTF1-204ENST00000558117 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.83□□□□□ -1.64
RTF1-204ENST00000558117 ZNF282Q9UDV7 671 aaPredicted RBP4.83□□□□□ -1.64
RTF1-204ENST00000558117 IKZF3Q9UKT9 509 aa4.83□□□□□ -1.64
RTF1-204ENST00000558117 PLCL2Q9UPR0 1127 aa4.83□□□□□ -1.64
RTF1-204ENST00000558117 MRPS28Q9Y2Q9 187 aaKnown RBP4.83□□□□□ -1.64
RTF1-204ENST00000558117 IGHV3-20A0A0C4DH32 117 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 TRBV2A0A0J9YWF9 115 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 PINLYPA6NC86 204 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 FAM166BA8MTA8 275 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 C3orf84H3BNL1 204 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 CDC7O00311 574 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 AKR7A3O95154 331 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 NCF1P14598 390 aaPredicted RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 USF1P22415 310 aaPredicted RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 JAK1P23458 1154 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 MPZP25189 248 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 SERPINB6P35237 376 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 OPRM1P35372 400 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 PITPNBP48739 271 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 CYB561P49447 251 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 NDUFA8P51970 172 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 AP1S1P61966 158 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 CDR2Q01850 454 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 GCNT1Q02742 428 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 ZNF415Q09FC8 603 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 TMEM187Q14656 261 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 KNOP1Q1ED39 458 aaKnown RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 CCDC40Q4G0X9 1142 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 SYT14P1Q58G82 188 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 PRAMEF8Q5VWM4 474 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 SPESP1Q6UW49 350 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 DET1Q7L5Y6 550 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 ZNF485Q8NCK3 441 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 OR4C3Q8NH37 302 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 ZNF418Q8TF45 676 aaPredicted RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 PIH1D2Q8WWB5 315 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 SSMEM1Q8WWF3 244 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 NSMAFQ92636 917 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.82□□□□□ -1.64
RTF1-204ENST00000558117 SLAMF9Q96A28 289 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 DHX58Q96C10 678 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 BSCL2Q96G97 398 aaPredicted RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 ERP44Q9BS26 406 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 COQ10BQ9H8M1 238 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 SRD5A3Q9H8P0 318 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 NGBQ9NPG2 151 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 DEPPQ9NTK1 212 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 FLRT3Q9NZU0 649 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 PDP1Q9P0J1 537 aaPredicted RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 OR12D3Q9UGF7 316 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 PLECQ15149 4684 aaKnown RBP4.82□□□□□ -1.64
RTF1-204ENST00000558117 ARHGAP21Q5T5U3 1957 aa4.82□□□□□ -1.64
RTF1-204ENST00000558117 STARD9Q9P2P6 4700 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 C13orf42A0A1B0GVH6 325 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 SCAMP2O15127 329 aaKnown RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 EPHB6O15197 1021 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 TSC22D2O75157 780 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 GLSO94925 669 aaPredicted RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 SLC25A14O95258 325 aaPredicted RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 YEATS4O95619 227 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 MT-ATP6P00846 226 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 PRG2P13727 222 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 AREGP15514 252 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 EEF1B2P24534 225 aaKnown RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 DPP4P27487 766 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 GTF2H1P32780 548 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 HLCSP50747 726 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 CCR8P51685 355 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 YWHAEP62258 255 aaKnown RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 MAT1AQ00266 395 aaKnown RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 HSPB3Q12988 150 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 XRCC4Q13426 336 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 CCDC14Q49A88 953 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 ACSF3Q4G176 576 aaPredicted RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 IQCCQ4KMZ1 466 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 ELFN2Q5R3F8 820 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 ZC2HC1BQ5TFG8 222 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 ATL3Q6DD88 541 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 CASC4Q6P4E1 433 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 BNIPLQ7Z465 357 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 LUZP2Q86TE4 346 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 KRTAP7-1Q8IUC3 87 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 LACC1Q8IV20 430 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 FBXL13Q8NEE6 735 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 OR2T11Q8NH01 316 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 GOLGA5Q8TBA6 731 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 BRSK1Q8TDC3 778 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 ATL1Q8WXF7 558 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 SFXN2Q96NB2 322 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 GFRA4Q9GZZ7 299 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 WDR13Q9H1Z4 485 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 SRMSQ9H3Y6 488 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 METTL17Q9H7H0 456 aaPredicted RBP4.81□□□□□ -1.64
RTF1-204ENST00000558117 VPS37BQ9H9H4 285 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 RNPEPL1Q9HAU8 725 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 MYNNQ9NPC7 610 aa4.81□□□□□ -1.64
RTF1-204ENST00000558117 ATAD3AQ9NVI7 634 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms