RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 KLF4O43474 513 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 DNPH1O43598 174 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 CYTIPO60759 359 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 MT-ATP6P00846 226 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 IGF2P01344 180 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 CEACAM8P31997 349 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-227ENST00000557269 ELF3P78545 371 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-227ENST00000557269 ADORA2A-AS1P86434 159 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 FHL1Q13642 323 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 SF3B4Q15427 424 aaKnown RBP eCLIP11.43□□□□□ -0.585e-8■■■■■ 52.3
SHMT2-227ENST00000557269 MICAQ29983 383 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 MS4A18Q3C1V0 323 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 C4orf17Q53FE4 359 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 ABLIM2Q6H8Q1 611 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 PGBD2Q6P3X8 592 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 PAQR6Q6TCH4 344 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 TMPRSS11FQ6ZWK6 438 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 H1FNTQ75WM6 255 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-227ENST00000557269 P4HA3Q7Z4N8 544 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 GCNT2Q8N0V5 402 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 OR13C2Q8NGS9 318 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 LIPHQ8WWY8 451 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF775Q96BV0 537 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-227ENST00000557269 PRRG4Q9BZD6 226 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 KLHL4Q9C0H6 718 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 SEMA6AQ9H2E6 1030 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 FKRPQ9H9S5 495 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 CHST11Q9NPF2 352 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 NANSQ9NR45 359 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 MRPL39Q9NYK5 338 aaKnown RBP11.43□□□□□ -0.58
SHMT2-227ENST00000557269 TAS2R5Q9NYW4 299 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 B3GAT1Q9P2W7 334 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 Q9UFV3 132 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 ERRFI1Q9UJM3 462 aaPredicted RBP11.43□□□□□ -0.58
SHMT2-227ENST00000557269 TMCC3Q9ULS5 477 aa11.43□□□□□ -0.58
SHMT2-227ENST00000557269 A0A1B0GUH1 482 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 EFCAB9A8MZ26 197 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 PLPP3O14495 311 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 OR10H3O60404 316 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 EIF1BO60739 113 aaKnown RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 CCNB2O95067 398 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 RCBTB2O95199 551 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 LDLRP01130 860 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 GASTP01350 101 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF26P17031 533 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 PRKACGP22612 351 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 FASP25445 335 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 DNAJA1P31689 397 aaKnown RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 NTF4P34130 210 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 TIMP3P35625 211 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 SRSF1Q07955 248 aaKnown RBP eCLIP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 PMS2P3Q13401 168 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 GUSBP1Q15486 140 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 ZFP1Q6P2D0 407 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 RRM2BQ7LG56 351 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 MAMDC2Q7Z304 686 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 CCDC71Q8IV32 467 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 LIX1LQ8IVB5 337 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 OR5J2Q8NH18 312 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 MOSPD2Q8NHP6 518 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 PIGXQ8TBF5 258 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 INTS12Q96CB8 462 aaKnown RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 ZHX1-C8orf76Q96EF9 292 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 CCDC120Q96HB5 630 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 TNFRSF13CQ96RJ3 184 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 TM9SF2Q99805 663 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 PSD2Q9BQI7 771 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 NAA11Q9BSU3 229 aaPredicted RBP11.42□□□□□ -0.58
SHMT2-227ENST00000557269 ASPNQ9BXN1 380 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 ZNF229Q9UJW7 825 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 RELNP78509 3460 aa11.42□□□□□ -0.58
SHMT2-227ENST00000557269 ESPL1Q14674 2120 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 TRAV27A0A087WT01 109 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 J3QKU1 62 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 DEAF1O75398 565 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-227ENST00000557269 E2F6O75461 281 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 TSPAN19P0C672 248 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 SAGP10523 405 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-227ENST00000557269 HLA-DOBP13765 273 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 POU2F1P14859 743 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 GTF2E2P29084 291 aaKnown RBP11.41□□□□□ -0.58
SHMT2-227ENST00000557269 AQP2P41181 271 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 KIR2DL2P43627 348 aaPredicted RBP11.41□□□□□ -0.58
SHMT2-227ENST00000557269 RASGEF1BQ0VAM2 473 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 SLC17A1Q14916 467 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 MFSD13AQ14CX5 517 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 CDSNQ15517 529 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 RIPPLY2Q5TAB7 128 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 TMEM225Q6GV28 225 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 TMEM211Q6ICI0 200 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 C1orf94Q6P1W5 598 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 NHLRC1Q6VVB1 395 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 NUFIP2Q7Z417 695 aaKnown RBP11.41□□□□□ -0.58
SHMT2-227ENST00000557269 GPAT4Q86UL3 456 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 EPHX4Q8IUS5 362 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 WDFY1Q8IWB7 410 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 TUSC5Q8IXB3 177 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 ZIC4Q8N9L1 334 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 SCAIQ8N9R8 606 aa11.41□□□□□ -0.58
SHMT2-227ENST00000557269 AQP11Q8NBQ7 271 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms