RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 CRYBB1P53674 252 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-210ENST00000556718 C1orf220Q5T0J3 134 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ZNF658Q5TYW1 1059 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-210ENST00000556718 MARC1Q5VT66 337 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 KDM7AQ6ZMT4 941 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 LRRC74BQ6ZQY2 392 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ARCQ7LC44 396 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 IQCF2Q8IXL9 164 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 SVOPLQ8N434 492 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ALLCQ8N6M5 410 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 SPATA4Q8NEY3 305 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 RHOXF1Q8NHV9 184 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 CCDC12Q8WUD4 166 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ARNTL2Q8WYA1 636 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 FGGYQ96C11 551 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 NUS1Q96E22 293 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 CCT8L2Q96SF2 557 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ZNF670Q9BS34 389 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 NUP58Q9BVL2 599 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 CHIAQ9BZP6 476 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 NMUR2Q9GZQ4 415 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 REEP4Q9H6H4 257 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 SLC40A1Q9NP59 571 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 DMAP1Q9NPF5 467 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-210ENST00000556718 KLHL28Q9NXS3 571 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 B3GNT2Q9NY97 397 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ANGPTL2Q9UKU9 493 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ABCG2Q9UNQ0 655 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 TMED5Q9Y3A6 229 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 RTL1A6NKG5 1358 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 NSD2O96028 1365 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ABCC11Q96J66 1382 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 SSH2Q76I76 1423 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 ATP10AO60312 1499 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 TCOF1Q13428 1488 aaKnown RBP3.32□□□□□ -1.88
PRPF39-210ENST00000556718 SYNMO15061 1565 aa3.32□□□□□ -1.88
PRPF39-210ENST00000556718 GCC2Q8IWJ2 1684 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ERBINQ96RT1 1412 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 PDS5BQ9NTI5 1447 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ANKRD50Q9ULJ7 1429 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 TTC21BQ7Z4L5 1316 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 CDHR2Q9BYE9 1310 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 A0A075B6Q4 140 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 USP27XA6NNY8 438 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ANKRD65E5RJM6 399 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 F8VZ95 297 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 MGRN1O60291 552 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 UGT1A9O60656 530 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 KLHL41O60662 606 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 TBL1XO60907 577 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 SLITRK3O94933 977 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 OXSR1O95747 527 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RPSAP08865 295 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 CCDC166P0CW27 439 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 SFTPCP11686 197 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ETS2P15036 469 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 GDF1P27539 372 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 CD1CP29017 333 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 IL12AP29459 219 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 CALCRP30988 508 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 PRKAR2BP31323 418 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 QARSP47897 775 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 PRMT2P55345 433 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 BCL2L1Q07817 233 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 BST2Q10589 180 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 SRSF5Q13243 272 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 EIPR1Q53HC9 387 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 PAN3Q58A45 887 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 SAMD4BQ5PRF9 694 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 PRAMEF20Q5VT98 475 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RNLSQ5VYX0 342 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 CARD17Q5XLA6 110 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 SPECC1LQ69YQ0 1117 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 C16orf87Q6PH81 154 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 BZW1Q7L1Q6 419 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 TRIM69Q86WT6 500 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 OR2L13Q8N349 312 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 OR2A12Q8NGT7 310 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 OR9A1PQ8NGU1 263 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ERMNQ8TAM6 284 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RAB3IL1Q8TBN0 382 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ANKRD49Q8WVL7 239 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 STMN2Q93045 179 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 OPTNQ96CV9 577 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 ZNF641Q96N77 438 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 TSNARE1Q96NA8 513 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 MTMR9Q96QG7 549 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RNF2Q99496 336 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RIOK1Q9BRS2 568 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 YIPF3Q9GZM5 350 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RBKSQ9H477 322 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 SLC7A10Q9NS82 523 aa3.31□□□□□ -1.88
PRPF39-210ENST00000556718 RPL36Q9Y3U8 105 aaKnown RBP3.31□□□□□ -1.88
PRPF39-210ENST00000556718 BCORL1Q5H9F3 1711 aa3.3□□□□□ -1.88
PRPF39-210ENST00000556718 SUPT6HQ7KZ85 1726 aaKnown RBP3.3□□□□□ -1.88
PRPF39-210ENST00000556718 MBD5Q9P267 1494 aa3.3□□□□□ -1.88
PRPF39-210ENST00000556718 RGS12O14924 1447 aa3.3□□□□□ -1.88
PRPF39-210ENST00000556718 PTPRKQ15262 1439 aa3.3□□□□□ -1.88
PRPF39-210ENST00000556718 PPIP5K1Q6PFW1 1433 aa3.3□□□□□ -1.88
PRPF39-210ENST00000556718 POGZQ7Z3K3 1410 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms