RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 PAMR1Q6UXH9 720 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 KDM7AQ6ZMT4 941 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 C17orf107Q6ZR85 190 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 ADCK2Q7Z695 626 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 PHLDB2Q86SQ0 1253 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 ASPGQ86U10 573 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 AKAP14Q86UN6 197 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 LIX1Q8N485 282 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 IQUBQ8NA54 791 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 DEFB124Q8NES8 71 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 OR52M1Q8NGK5 317 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 FIBINQ8TAL6 211 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 SMPDL3AQ92484 453 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 NDRG1Q92597 394 aaKnown RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 EEF2KMTQ96G04 330 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 SMARCD1Q96GM5 515 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 PAGE5Q96GU1 130 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 GBP5Q96PP8 586 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 GABRG3Q99928 467 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 THUMPD3Q9BV44 507 aaKnown RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 MRPL37Q9BZE1 423 aaKnown RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 ZSCAN16Q9H4T2 348 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 MRM3Q9HC36 420 aaKnown RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 UBE2TQ9NPD8 197 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 DMAP1Q9NPF5 467 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 PAQR5Q9NXK6 330 aaPredicted RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 ARMCX1Q9P291 453 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 CIDEBQ9UHD4 219 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 CHMP2BQ9UQN3 213 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 LIPT1Q9Y234 373 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 DCHS2Q6V1P9 2916 aa3.56□□□□□ -1.84
PRPF39-209ENST00000556353 TEP1Q99973 2627 aaKnown RBP3.56□□□□□ -1.84
PRPF39-209ENST00000556353 HIVEP3Q5T1R4 2406 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 TRAV9-2A0A087WT02 112 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 FOXI3A8MTJ6 420 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 C10orf142B7Z368 130 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 NEDD8-MDP1E9PL57 170 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 NUDT21O43809 227 aaKnown RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SMIM24O75264 130 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 GNA14O95837 355 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CALCAP01258 141 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 HMGN1P05114 100 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 PROS1P07225 676 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 GIG44P09565 113 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CLUP10909 449 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 KRT3P12035 628 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CPN2P22792 545 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CASP3P42574 277 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 GCLMP48507 274 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 POU3F4P49335 361 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SERPINB8P50452 374 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 NDUFA8P51970 172 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 IST1P53990 364 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ATXN3P54252 364 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ELP6Q0PNE2 266 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 DYNC1I2Q13409 638 aaKnown RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF273Q14593 569 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CHRNA6Q15825 494 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 PCK2Q16822 640 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 REP15Q6BDI9 236 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 RFWD3Q6PCD5 774 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SLC51BQ86UW2 128 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CACUL1Q86Y37 369 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SLC43A2Q8N370 569 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 OR13C2Q8NGS9 318 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 WFDC5Q8TCV5 224 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 STARD8Q92502 1023 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CHMP6Q96FZ7 201 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 RAB3IPQ96QF0 476 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ERP44Q9BS26 406 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SHCBP1LQ9BZQ2 653 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ABCG8Q9H221 673 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 CUEDC2Q9H467 287 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SYNDIG1Q9H7V2 258 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 MAGEF1Q9HAY2 307 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 IL26Q9NPH9 171 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 TMEM9BQ9NQ34 198 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 DNAJC17Q9NVM6 304 aaKnown RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 RAB20Q9NX57 234 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 C5AR2Q9P296 337 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 APPL1Q9UKG1 709 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 VANGL2Q9ULK5 521 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 SCML2Q9UQR0 700 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ERVK-19Q9WJR5 959 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 HBS1LQ9Y450 684 aaKnown RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 MAP1AP78559 2803 aaPredicted RBP3.55□□□□□ -1.84
PRPF39-209ENST00000556353 ABCA12Q86UK0 2595 aa3.55□□□□□ -1.84
PRPF39-209ENST00000556353 GOLGA8QA0A0J9YX86 632 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 LOC105371267A0A1B0GV96 52 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 C2orf92A0A1B0GVN3 265 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 PVALEFA0A1B0GWK0 134 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 HTR3EA5X5Y0 456 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 GOLGA8OA6NCC3 632 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 GOLGA8NF8WBI6 632 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 PDXKO00764 312 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SLC9A3R1O14745 358 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CTAG2O75638 210 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RBBP9O75884 186 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 ATP5HO75947 161 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RHOBTB1O94844 696 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms