RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TIMP3P35625 211 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 IFNGR2P38484 337 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 GPR4P46093 362 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 P2RY4P51582 365 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 NUP107P57740 925 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 ELF3P78545 371 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 PMPCAQ10713 525 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 MICAQ29983 383 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 OTUD3Q5T2D3 398 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 TMEM211Q6ICI0 200 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 ZNF770Q6IQ21 691 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 HMBOX1Q6NT76 420 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 TMPRSS11FQ6ZWK6 438 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 H1FNTQ75WM6 255 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 ZER1Q7Z7L7 766 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 TMEM179BQ7Z7N9 219 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 AMIGO2Q86SJ2 522 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 FJX1Q86VR8 437 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 CCDC103Q8IW40 242 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 CDK20Q8IZL9 346 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 SLC43A2Q8N370 569 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 LINC00471Q8N535 108 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 MBD3L2Q8NHZ7 208 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 ZNF417Q8TAU3 575 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 ABHD3Q8WU67 409 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 LIPHQ8WWY8 451 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 FAM46AQ96IP4 442 aaKnown RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 ZNF587Q96SQ5 575 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 PKP2Q99959 881 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 BDH2Q9BUT1 245 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 CHST11Q9NPF2 352 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 MRPL39Q9NYK5 338 aaKnown RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 C6orf203Q9P0P8 240 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-209ENST00000553949 B3GALT5Q9Y2C3 310 aa10.93□□□□□ -0.66
SHMT2-209ENST00000553949 POLEQ07864 2286 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 LRRTM2O43300 516 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 RAMP1O60894 148 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 RCBTB2O95199 551 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 HIST1H2ABP04908 130 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 SAGP10523 405 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-209ENST00000553949 PMS2P3Q13401 168 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 RNPS1Q15287 305 aaKnown RBP10.92□□□□□ -0.66
SHMT2-209ENST00000553949 C4orf17Q53FE4 359 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 GTF2IRD2BQ6EKJ0 949 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 ABLIM2Q6H8Q1 611 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 OR2A2Q6IF42 318 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 C1orf94Q6P1W5 598 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 PGBD2Q6P3X8 592 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 SHQ1Q6PI26 577 aaKnown RBP10.92□□□□□ -0.66
SHMT2-209ENST00000553949 NCCRP1Q6ZVX7 275 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-209ENST00000553949 HIST3H2AQ7L7L0 130 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 GTF2IRD2Q86UP8 949 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 AQP11Q8NBQ7 271 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 ADPRHL1Q8NDY3 354 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 OR10G2Q8NGC3 310 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 OR9Q2Q8NGE9 314 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 OR5J2Q8NH18 312 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 GIPC3Q8TF64 312 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 HIST1H2ACQ93077 130 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 NRBF2Q96F24 287 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 CENPNQ96H22 339 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-209ENST00000553949 GPA33Q99795 319 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 SEMA6AQ9H2E6 1030 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 PDP1Q9P0J1 537 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-209ENST00000553949 KLHL9Q9P2J3 617 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 KLHL13Q9P2N7 655 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 RASD1Q9Y272 281 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 RELNP78509 3460 aa10.92□□□□□ -0.66
SHMT2-209ENST00000553949 A0A1W2PNV4 684 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 ARRDC5A6NEK1 342 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 ZNF716A6NP11 495 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 PLPP3O14495 311 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 CDC42EP2O14613 210 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 KLF4O43474 513 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 VAMP5O95183 116 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 OR6A2O95222 327 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 BAG2O95816 211 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 PLGP00747 810 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-209ENST00000553949 GASTP01350 101 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 IL2RAP01589 272 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 FPR3P25089 353 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 CEACAM8P31997 349 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-209ENST00000553949 SLC9A3P48764 834 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 ARHGDIAP52565 204 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 SLC16A1P53985 500 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 PER3P56645 1201 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 RASGEF1BQ0VAM2 473 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 PDK3Q15120 406 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 RIPPLY2Q5TAB7 128 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 TMEM225Q6GV28 225 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 NANOGNBQ7Z5D8 188 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 GPAT4Q86UL3 456 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 MCEMP1Q8IX19 187 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 HS3ST5Q8IZT8 346 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 KDM8Q8N371 416 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 NAXEQ8NCW5 288 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 OR13C2Q8NGS9 318 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 OR5K1Q8NHB7 308 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 GNPDA2Q8TDQ7 276 aa10.91□□□□□ -0.66
SHMT2-209ENST00000553949 RND1Q92730 232 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms