RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 DPY30Q9C005 99 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 PPCSQ9HAB8 311 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 GIMAP2Q9UG22 337 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 RASD1Q9Y272 281 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 TRAV20A0A0B4J274 112 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 M0R233 179 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 NR5A2O00482 541 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 BCAS1O75363 584 aaPredicted RBP14.62□□□□□ -0.07
VPS29-204ENST00000548259 KRT4P19013 534 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 EPHA1P21709 976 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 CHI3L1P36222 383 aaPredicted RBP14.62□□□□□ -0.07
VPS29-204ENST00000548259 SELENOPP49908 381 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 CLDN8P56748 225 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 COPZ1P61923 177 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 TUBA1BP68363 451 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 TUBA4AP68366 448 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 ROR2Q01974 943 aaKnown RBP14.62□□□□□ -0.07
VPS29-204ENST00000548259 UGT3A2Q3SY77 523 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 ANXA8L1Q5VT79 327 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 FAHD2BQ6P2I3 314 aaPredicted RBP14.62□□□□□ -0.07
VPS29-204ENST00000548259 CREB3L2Q70SY1 520 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 TUBA1AQ71U36 451 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 CLECL1Q8IZS7 167 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 CLEC4FQ8N1N0 589 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 AGR3Q8TD06 166 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 RAB8BQ92930 207 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 FAHD2AQ96GK7 314 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 LINC00470Q9BZP3 86 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 TPK1Q9H3S4 243 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 LPAR2Q9HBW0 351 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 ADPRHL2Q9NX46 363 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 NOX1Q9Y5S8 564 aa14.62□□□□□ -0.07
VPS29-204ENST00000548259 IGHV2OR16-5A0A0B4J2B6 119 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 ZC3H12DA2A288 527 aaKnown RBP14.61□□□□□ -0.07
VPS29-204ENST00000548259 CLDN24A6NM45 220 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 AP3D1O14617 1153 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 RGS9O75916 674 aaPredicted RBP14.61□□□□□ -0.07
VPS29-204ENST00000548259 PNPP00491 289 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 CHRNGP07510 517 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 IL7RP16871 459 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 ACHEP22303 614 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 CAPZA2P47755 286 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 TMEM33P57088 247 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 NPRL3Q12980 569 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 SNTB2Q13425 540 aaKnown RBP14.61□□□□□ -0.07
VPS29-204ENST00000548259 PCLAFQ15004 111 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 PRAMEF8Q5VWM4 474 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 PRAMEF7Q5VXH5 474 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 OR4F3Q6IEY1 312 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 THSD4Q6ZMP0 1018 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 CDK20Q8IZL9 346 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 CLDND2Q8NHS1 167 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 RDH5Q92781 318 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 ZG16BQ96DA0 208 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 CRLF2Q9HC73 371 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 SLC52A3Q9NQ40 469 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 NOP53Q9NZM5 478 aaKnown RBP14.61□□□□□ -0.07
VPS29-204ENST00000548259 REV1Q9UBZ9 1251 aa14.61□□□□□ -0.07
VPS29-204ENST00000548259 PRSS51A0A1B0GVH4 220 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 TMEM129A0AVI4 362 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 AGAP5A6NIR3 686 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 A8MVM7 634 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 LYNX1G3V0Z9 82 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 BCL10O95999 233 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 CHRM4P08173 479 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 LYNX1P0DP58 116 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 G6PDP11413 515 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 GTF2E2P29084 291 aaKnown RBP14.6□□□□□ -0.07
VPS29-204ENST00000548259 SERPINB5P36952 375 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 TXNL4AP83876 142 aaKnown RBP14.6□□□□□ -0.07
VPS29-204ENST00000548259 ZNF311Q5JNZ3 666 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 PRR31Q5SQ13 230 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 SHISA2Q6UWI4 295 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 GPR137CQ8N3F9 429 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 OR8J2Q8NGG1 315 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 TRNT1Q96Q11 434 aaKnown RBP14.6□□□□□ -0.07
VPS29-204ENST00000548259 ZNF416Q9BWM5 594 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 NARFLQ9H6Q4 476 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 MTHFD2LQ9H903 347 aaPredicted RBP14.6□□□□□ -0.07
VPS29-204ENST00000548259 MARCOQ9UEW3 520 aaPredicted RBP14.6□□□□□ -0.07
VPS29-204ENST00000548259 RCE1Q9Y256 329 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 DYSFO75923 2080 aa14.6□□□□□ -0.07
VPS29-204ENST00000548259 A0A096LPI6 279 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 RPL36A-HNRNPH2H7BZ11 118 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 SLC43A1O75387 559 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 CPSF4O95639 269 aaKnown RBP14.59□□□□□ -0.07
VPS29-204ENST00000548259 DBIP07108 87 aaKnown RBP14.59□□□□□ -0.07
VPS29-204ENST00000548259 ARFIP2P53365 341 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 RPS23P62266 143 aaKnown RBP14.59□□□□□ -0.07
VPS29-204ENST00000548259 ARF1P84077 181 aaKnown RBP14.59□□□□□ -0.07
VPS29-204ENST00000548259 MYBPC1Q00872 1141 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 EMX2Q04743 252 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 EPS8Q12929 822 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 SAXO2Q658L1 398 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 KRT80Q6KB66 452 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 ZCCHC23Q6ZST2 131 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 HMGN2P46Q86SG4 172 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 MRPL24Q96A35 216 aaKnown RBP14.59□□□□□ -0.07
VPS29-204ENST00000548259 NEURL3Q96EH8 262 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 ZNF696Q9H7X3 374 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms