RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ARPC5O15511 151 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 UTS2O95399 124 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 PRSS3P35030 304 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 GLO1Q04760 184 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 RDH10Q8IZV5 341 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 TSLPQ969D9 159 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 COX14Q96I36 57 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.44□□□□□ -0.11e-6■■□□□ 13.1
CUX1-211ENST00000546411 RANBP3Q9H6Z4 567 aaPredicted RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 DKKL1Q9UK85 242 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 FBXL4Q9UKA2 621 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 TNFRSF10CO14798 259 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 CELA2BP08218 269 aaPredicted RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 OR2T7P0C7T2 308 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 HLA-DMAP28067 261 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 RACK1P63244 317 aaKnown RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 TFF2Q03403 129 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 DUSP8Q13202 625 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 APOOLQ6UXV4 268 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 UBE3DQ7Z6J8 389 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 INO80EQ8NBZ0 244 aaPredicted RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 OR2T27Q8NH04 317 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 WDR34Q96EX3 536 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 ELMOD3Q96FG2 381 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 ZNF471Q9BX82 626 aaPredicted RBP14.44□□□□□ -0.1
CUX1-211ENST00000546411 C2orf42Q9NWW7 574 aa14.44□□□□□ -0.1
CUX1-211ENST00000546411 SURF4O15260 269 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 IGHA2P01877 340 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 ARSBP15848 533 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 CPEP16870 476 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 LAIR1Q6GTX8 287 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 MFSD4AQ8N468 514 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 DNAAF1Q8NEP3 725 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 ZNF701Q9NV72 531 aaPredicted RBP14.43□□□□□ -0.1
CUX1-211ENST00000546411 WBP1LQ9NX94 342 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 OR14I1A6ND48 311 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 G3V3Y1 287 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 DSCR3O14972 297 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 SLC2A5P22732 501 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 EMDP50402 254 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 PRAMEF20Q5VT98 475 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 NIPAL3Q6P499 406 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 GCDHQ92947 438 aaPredicted RBP14.43□□□□□ -0.1
CUX1-211ENST00000546411 SLC25A44Q96H78 314 aaPredicted RBP14.43□□□□□ -0.1
CUX1-211ENST00000546411 ZNF717Q9BY31 904 aaPredicted RBP14.43□□□□□ -0.1
CUX1-211ENST00000546411 CST11Q9H112 138 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 ZNF281Q9Y2X9 895 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 MAB21L2Q9Y586 359 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 TDRD6O60522 2096 aaKnown RBP14.43□□□□□ -0.1
CUX1-211ENST00000546411 TFP02787 698 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 S100A10P60903 97 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 RPL22L1Q6P5R6 122 aaKnown RBP14.43□□□□□ -0.1
CUX1-211ENST00000546411 ELMOD2Q8IZ81 293 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 SIRT6Q8N6T7 355 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 POTEKPQ9BYX7 375 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 ANKRD19PQ9H560 264 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 LYRM4Q9HD34 91 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 MMP17Q9ULZ9 603 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 PSME4Q14997 1843 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 GREB1Q4ZG55 1949 aa14.43□□□□□ -0.1
CUX1-211ENST00000546411 ZNF593O00488 134 aaPredicted RBP14.42□□□□□ -0.1
CUX1-211ENST00000546411 ZNF208O43345 1280 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 ALDOBP05062 364 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 ZNF43P17038 809 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 AKR1C4P17516 323 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 UQCRC1P31930 480 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 HMGA2P52926 109 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 FCN2Q15485 313 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 LINC00346Q8IVM7 164 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 SPERTQ8NA61 448 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 OR8D4Q8NGM9 314 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 CMC2Q9NRP2 79 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 NPIPA2E9PIF3 369 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 F5H5K5 113 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 NPIPA3F8WFD2 350 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 SCGB1D2O95969 90 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 GDNFP39905 211 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 CEBPGP53567 150 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 HYAL1Q12794 435 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 RNASE10Q5GAN6 216 aaKnown RBP14.42□□□□□ -0.1
CUX1-211ENST00000546411 C1QTNF12Q5T7M4 302 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 KIRREL2Q6UWL6 708 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 VASH1Q7L8A9 365 aaPredicted RBP14.42□□□□□ -0.1
CUX1-211ENST00000546411 SIAH3Q8IW03 269 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 OR4C3Q8NH37 302 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 OR2A14Q96R47 310 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 ACTR6Q9GZN1 396 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 CRISPLD2Q9H0B8 497 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 RGPD3A6NKT7 1758 aaPredicted RBP14.42□□□□□ -0.1
CUX1-211ENST00000546411 RGPD4Q7Z3J3 1758 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 KANTRA0A1W2PQU2 76 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 CDC42EP2O14613 210 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 CD14P08571 375 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 DUSP2Q05923 314 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 LINC00299Q6ZSB3 139 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 PM20D2Q8IYS1 436 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 ATOH1Q92858 354 aaPredicted RBP14.42□□□□□ -0.1
CUX1-211ENST00000546411 TXNDC15Q96J42 360 aa14.42□□□□□ -0.1
CUX1-211ENST00000546411 RBM24Q9BX46 236 aaKnown RBP14.42□□□□□ -0.1
CUX1-211ENST00000546411 FOXQ1Q9C009 403 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms